Miniature inverted-repeat transposable elements (MITEs), derived insertional polymorphism as a tool of marker systems for molecular plant breeding

Venkatesh, B Nandini - Molecular Biology Reports, 2020 - Springer
Plant molecular breeding is expected to give significant gains in cultivar development
through development and utilization of suitable molecular marker systems for genetic …

[HTML][HTML] Rapid detection of wheat blast pathogen Magnaporthe oryzae Triticum pathotype using genome-specific primers and Cas12a-mediated technology

H Kang, Y Peng, K Hua, Y Deng, M Bellizzi, DR Gupta… - Engineering, 2021 - Elsevier
Wheat blast, caused by the fungus Magnaporthe oryzae Triticum (MoT) pathotype, is a
devastating disease persistent in South America and Bangladesh. Since MoT generally fails …

Chromosome-scale genome assembly of a Japanese chili pepper landrace, Capsicum annuum 'Takanotsume'

K Shirasawa, M Hosokawa, Y Yasui, A Toyoda… - DNA …, 2023 - academic.oup.com
Here, we report the genome sequence of a popular Japanese chili pepper landrace,
Capsicum annuum 'Takanotsume'. We used long-read sequencing and optical mapping …

[PDF][PDF] Transposable Elements Contribute to Genome Dynamics and Gene Expression Variation in the Fungal Plant Pathogen Verticillium dahliae

DE Torres, BPHJ Thomma… - Genome Biology and …, 2021 - academic.oup.com
Transposable elements (TEs) are a major source of genetic and regulatory variation in their
host genome and are consequently thought to play important roles in evolution. Many fungal …

Generic repeat finder: a high-sensitivity tool for genome-wide de novo repeat detection

J Shi, C Liang - Plant physiology, 2019 - academic.oup.com
Comprehensive and accurate annotation of the repeatome, including transposons, is critical
for deepening our understanding of repeat origins, biogenesis, regulatory mechanisms, and …

Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)

H Kurokochi, N Tajima, MP Sato, K Yoshitake… - DNA …, 2023 - academic.oup.com
Here, we report the first telomere-to-telomere genome assembly of matsutake (Tricholoma
matsutake), which consists of 13 sequences (spanning 161.0 Mb) and a 76 kb circular …

Identification of two novel rice S genes through combination of association and transcription analyses with gene‐editing technology

Y Xu, L Bai, M Liu, Y Liu, S Peng, P Hu… - Plant Biotechnology …, 2023 - Wiley Online Library
Traditional rice blast resistance breeding largely depends on utilizing typical resistance (R)
genes. However, the lack of durable R genes has prompted rice breeders to find new …

Developing transposable element marker system for molecular breeding

RS Bhat, K Shirasawa, Y Monden, H Yamashita… - … genomics: methods and …, 2020 - Springer
Transposable element (TE) marker system was developed considering the useful properties
of the transposable elements such as their large number in the animal and plant genomes …

Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.)

M Gayathri, K Shirasawa, RK Varshney, MK Pandey… - BMC Research …, 2018 - Springer
Objective In peanut, the DNA polymorphism is very low despite enormous phenotypic
variations. This limits the use of genomics-assisted breeding to enhance peanut productivity …

Identification of an active miniature inverted‐repeat transposable element mJing in rice

Y Tang, X Ma, S Zhao, W Xue, X Zheng… - The Plant …, 2019 - Wiley Online Library
Miniature inverted‐repeat transposable elements (MITE s) are structurally homogeneous
non‐autonomous DNA transposons with high copy numbers that play important roles in …