A nonequilibrium allosteric model for receptor-kinase complexes: The role of energy dissipation in chemotaxis signaling
The Escherichia coli chemotaxis signaling pathway has served as a model system for the
adaptive sensing of environmental signals by large protein complexes. The chemoreceptors …
adaptive sensing of environmental signals by large protein complexes. The chemoreceptors …
The renormalization group for non-equilibrium systems
Y Tu - Nature Physics, 2023 - nature.com
The renormalization group for non-equilibrium systems | Nature Physics Skip to main content
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Milestoning estimators of dissipation in systems observed at a coarse resolution
Many nonequilibrium, active processes are observed at a coarse-grained level, where
different microscopic configurations are projected onto the same observable state. Such …
different microscopic configurations are projected onto the same observable state. Such …
Dissipation and energy propagation across scales in an active cytoskeletal material
Living systems are intrinsically nonequilibrium: They use metabolically derived chemical
energy to power their emergent dynamics and self-organization. A crucial driver of these …
energy to power their emergent dynamics and self-organization. A crucial driver of these …
Unraveling active baths through their hidden degrees of freedom
DM Busiello, M Ciarchi, I Di Terlizzi - Physical Review Research, 2024 - APS
The dynamics of a probe particle is highly influenced by the nature of the bath in which it is
immersed. In particular, baths composed by active (eg, self-propelled) particles induce …
immersed. In particular, baths composed by active (eg, self-propelled) particles induce …
Optimal power extraction from active particles with hidden states
We identify generic protocols achieving optimal power extraction from a single active particle
subject to continuous feedback control under the assumption that its spatial trajectory, but …
subject to continuous feedback control under the assumption that its spatial trajectory, but …
Energy cost for flocking of active spins: the cusped dissipation maximum at the flocking transition
We study the energy cost of flocking in the active Ising model (AIM) and show that, besides
the energy cost for self-propelled motion, an additional energy dissipation is required to …
the energy cost for self-propelled motion, an additional energy dissipation is required to …
[HTML][HTML] Eukaryotic gene regulation at equilibrium, or non?
Abstract Models of transcriptional regulation that assume equilibrium binding of transcription
factors have been less successful at predicting gene expression from sequence in …
factors have been less successful at predicting gene expression from sequence in …
Flexibility and sensitivity in gene regulation out of equilibrium
Cells adapt to environments and tune gene expression by controlling the concentrations of
proteins and their kinetics in regulatory networks. In both eukaryotes and prokaryotes …
proteins and their kinetics in regulatory networks. In both eukaryotes and prokaryotes …
Thermodynamics for reduced models of chemical reactions by PEA and QSSA
The partial equilibrium approximation (PEA) and the quasi-steady-state approximation
(QSSA) are two classical methods for reducing complex macroscopic chemical reactions …
(QSSA) are two classical methods for reducing complex macroscopic chemical reactions …