Schizophrenia genomics: genetic complexity and functional insights

PF Sullivan, S Yao, J Hjerling-Leffler - Nature Reviews Neuroscience, 2024 - nature.com
Determining the causes of schizophrenia has been a notoriously intractable problem,
resistant to a multitude of investigative approaches over centuries. In recent decades …

OME-Zarr: a cloud-optimized bioimaging file format with international community support

J Moore, D Basurto-Lozada, S Besson… - Histochemistry and Cell …, 2023 - Springer
A growing community is constructing a next-generation file format (NGFF) for bioimaging to
overcome problems of scalability and heterogeneity. Organized by the Open Microscopy …

Hippocampome. org 2.0 is a knowledge base enabling data-driven spiking neural network simulations of rodent hippocampal circuits

DW Wheeler, JD Kopsick, N Sutton, C Tecuatl… - Elife, 2024 - elifesciences.org
Hippocampome. org is a mature open-access knowledge base of the rodent hippocampal
formation focusing on neuron types and their properties. Previously, Hippocampome. org v1 …

Tackling neurodegeneration in vitro with omics: a path towards new targets and drugs

C Carraro, JV Montgomery, J Klimmt… - Frontiers in molecular …, 2024 - frontiersin.org
Drug discovery is a generally inefficient and capital-intensive process. For
neurodegenerative diseases (NDDs), the development of novel therapeutics is particularly …

Online conversion of reconstructed neural morphologies into standardized SWC format

K Mehta, B Ljungquist, J Ogden, S Nanda… - Nature …, 2023 - nature.com
Digital reconstructions provide an accurate and reliable way to store, share, model, quantify,
and analyze neural morphology. Continuous advances in cellular labeling, tissue …

[HTML][HTML] Developmental mouse brain common coordinate framework

FA Kronman, JK Liwang, R Betty, DJ Vanselow, YT Wu… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Abstract 3D standard reference brains serve as key resources to understand the spatial
organization of the brain and promote interoperability across different studies. However …

[HTML][HTML] A neuroscientist's guide to using murine brain atlases for efficient analysis and transparent reporting

H Kleven, I Reiten, CH Blixhavn, U Schlegel… - Frontiers in …, 2023 - frontiersin.org
Brain atlases are widely used in neuroscience as resources for conducting experimental
studies, and for integrating, analyzing, and reporting data from animal models. A variety of …

[HTML][HTML] Full-Spectrum Neuronal Diversity and Stereotypy through Whole Brain Morphometry

Y Liu, S Jiang, Y Li, S Zhao, Z Yun, ZH Zhao… - Research …, 2023 - ncbi.nlm.nih.gov
We conducted a large-scale study of whole-brain morphometry, analyzing 3.7 peta-voxels of
mouse brain images at the single-cell resolution, producing one of the largest multi …

[HTML][HTML] epDevAtlas: Mapping GABAergic cells and microglia in postnatal mouse brains

JK Liwang, FA Kronman, JA Minteer, YT Wu… - bioRxiv, 2023 - ncbi.nlm.nih.gov
During development, brain regions follow encoded growth trajectories. Compared to
classical brain growth charts, high-definition growth charts could quantify regional volumetric …

Combinatorial quantification of distinct neural projections from retrograde tracing

S Venkadesh, A Santarelli, T Boesen, HW Dong… - Nature …, 2023 - nature.com
Comprehensive quantification of neuronal architectures underlying anatomical brain
connectivity remains challenging. We introduce a method to identify distinct axonal …