Single-molecule force spectroscopy of protein folding
The use of force probes to induce unfolding and refolding of single molecules through the
application of mechanical tension, known as single-molecule force spectroscopy (SMFS) …
application of mechanical tension, known as single-molecule force spectroscopy (SMFS) …
[HTML][HTML] Folding and functions of knotted proteins
STD Hsu - Current Opinion in Structural Biology, 2023 - Elsevier
Topologically knotted proteins have entangled structural elements within their native
structures that cannot be disentangled simply by pulling from the N-and C-termini …
structures that cannot be disentangled simply by pulling from the N-and C-termini …
The mechanical bond in biological systems
The field of mechanically interlocked molecules (MIMs) has advanced rapidly in recent
years, with much work focused on their use in materials, sensing, and catalysis. However …
years, with much work focused on their use in materials, sensing, and catalysis. However …
De novo design of knotted tandem repeat proteins
De novo protein design methods can create proteins with folds not yet seen in nature. These
methods largely focus on optimizing the compatibility between the designed sequence and …
methods largely focus on optimizing the compatibility between the designed sequence and …
AlphaFold predicts novel human proteins with knots
The fact that proteins can have their chain formed in a knot is known for almost 30 years.
However, as they are not common, only a fraction of such proteins is available in the Protein …
However, as they are not common, only a fraction of such proteins is available in the Protein …
Sampling molecular conformations and dynamics in a multiuser virtual reality framework
M O'Connor, HM Deeks, E Dawn, O Metatla… - Science …, 2018 - science.org
We describe a framework for interactive molecular dynamics in a multiuser virtual reality
(VR) environment, combining rigorous cloud-mounted atomistic physics simulations with …
(VR) environment, combining rigorous cloud-mounted atomistic physics simulations with …
Stereoselective synthesis of a composite knot with nine crossings
L Zhang, AJ Stephens, AL Nussbaumer… - Nature Chemistry, 2018 - nature.com
The simultaneous synthesis of a molecular nine-crossing composite knot that contains three
trefoil tangles of the same handedness and a 9 7 3 link (a type of cyclic [3] catenane …
trefoil tangles of the same handedness and a 9 7 3 link (a type of cyclic [3] catenane …
Mechanical strength of RNA knot in Zika virus protects against cellular defenses
M Zhao, MT Woodside - Nature Chemical Biology, 2021 - nature.com
Unusual knot-like structures recently discovered in viral exoribonuclease-resistant RNAs
(xrRNAs) prevent digestion by host RNases to create subgenomic RNAs enhancing …
(xrRNAs) prevent digestion by host RNases to create subgenomic RNAs enhancing …
[HTML][HTML] Interactive molecular dynamics in virtual reality from quantum chemistry to drug binding: An open-source multi-person framework
MB O'Connor, SJ Bennie, HM Deeks… - The Journal of …, 2019 - pubs.aip.org
As molecular scientists have made progress in their ability to engineer nanoscale molecular
structure, we face new challenges in our ability to engineer molecular dynamics (MD) and …
structure, we face new challenges in our ability to engineer molecular dynamics (MD) and …
On folding of entangled proteins: knots, lassos, links and θ-curves
JI Sulkowska - Current opinion in structural biology, 2020 - Elsevier
Around 6% of protein structures deposited in the PDB are entangled, forming knots,
slipknots, lassos, links, and θ-curves. In each of these cases, the protein backbone weaves …
slipknots, lassos, links, and θ-curves. In each of these cases, the protein backbone weaves …