The relaxation, diffusion and translocation dynamics of single linear polymer chains in
confinement is briefly reviewed with emphasis on the comparison between theoretical …

This article reports the first attempt to apply the relaxation mode analysis method to a
simulation of a biomolecular system. In biomolecular systems, the principal component …

It is important to extract reaction coordinates or order parameters from protein simulations in
order to investigate the local minimum-energy states and the transitions between them. The …

The theory of polymer dynamics describes the intermediate scattering function for a polymer
molecule in terms of relaxation modes defined by normal coordinates for the corresponding …

We revisit the classical problem of a polymer confined in a slit in both of its static and
dynamic aspects. We confirm a number of well known scaling predictions and analyze their …

We report extensive simulations of the relaxation dynamics of a self-avoiding polymer
confined inside a cylindrical pore. In particular, we concentrate on examining how …

Pn k¼1 RðiÀ1Þnþk, where Rk denotes the position of the kth segment relative to the center
of mass of the polymer chain. The apparent exponent z which describes the N-dependence …

Monte Carlo simulations are presented for the observation of the dynamics of a self-avoiding
polymer in three types of confinement: slit, tube, and cube. We pay special attention to the …

Cubic lattice Monte Carlo simulation studies were conducted to examine the effect of
confinement on dilute and non-dilute solutions of polymer chains in a channel with a square …

We study the equilibrium properties of flexible polymer chains confined in a soft tube by
means of extensive Monte Carlo simulations. The tube wall is that of a single sheet six …