The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota
JC Lagier, P Hugon, S Khelaifia… - Clinical microbiology …, 2015 - Am Soc Microbiol
Bacterial culture was the first method used to describe the human microbiota, but this
method is considered outdated by many researchers. Metagenomics studies have since …
method is considered outdated by many researchers. Metagenomics studies have since …
Present and future of culturing bacteria
J Overmann, B Abt, J Sikorski - Annual review of microbiology, 2017 - annualreviews.org
The cultivation of bacteria is highly biased toward a few phylogenetic groups. Many of the
currently underexplored bacterial lineages likely have novel biosynthetic pathways and …
currently underexplored bacterial lineages likely have novel biosynthetic pathways and …
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology
When it comes to the discovery and analysis of yet uncharted bacterial traits, pure cultures
are essential as only these allow detailed morphological and physiological characterization …
are essential as only these allow detailed morphological and physiological characterization …
Soil properties influence bacterial abundance and diversity under different land-use regimes in semi-arid environments
Bacterial diversity is known to be a driver of soil ecosystem services and it is influenced by
the natural integrity of the environments. Samples from garden soil, saline soil and sludge …
the natural integrity of the environments. Samples from garden soil, saline soil and sludge …
Planctomycetes as host-associated bacteria: a perspective that holds promise for their future isolations, by mimicking their native environmental niches in clinical …
OD Kaboré, S Godreuil, M Drancourt - Frontiers in Cellular and …, 2020 - frontiersin.org
Traditionally recognized as environmental bacteria, Planctomycetes have just been linked
recently to human pathology as opportunistic pathogens, arousing a great interest for clinical …
recently to human pathology as opportunistic pathogens, arousing a great interest for clinical …
Sustained bauxite residue rehabilitation with gypsum and organic matter 16 years after initial treatment
Bauxite residue is a high volume byproduct of alumina manufacture which is commonly
disposed of in purpose-built bauxite residue disposal areas (BRDAs). Natural waters …
disposed of in purpose-built bauxite residue disposal areas (BRDAs). Natural waters …
Niche-directed evolution modulates genome architecture in freshwater Planctomycetes
Freshwater environments teem with microbes that do not have counterparts in culture
collections or genetic data available in genomic repositories. Currently, our apprehension of …
collections or genetic data available in genomic repositories. Currently, our apprehension of …
The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes
IR Vitorino, OM Lage - Antonie Van Leeuwenhoek, 2022 - Springer
The phylum Planctomycetes comprises bacteria with uncommon features among
prokaryotes, such as cell division by budding, absence of the bacterial tubulin-homolog cell …
prokaryotes, such as cell division by budding, absence of the bacterial tubulin-homolog cell …
Stable-isotope probing identifies uncultured Planctomycetes as primary degraders of a complex heteropolysaccharide in soil
The exopolysaccharides (EPSs) produced by some bacteria are potential growth substrates
for other bacteria in soil. We used stable-isotope probing (SIP) to identify aerobic soil …
for other bacteria in soil. We used stable-isotope probing (SIP) to identify aerobic soil …
Large-scale impact of the 2016 Marine Heatwave on the plankton-associated microbial communities of the Great Barrier Reef (Australia)
Abstract The Great Barrier Reef (GBR) is the world's largest coral ecosystem and is
threatened by climate change. This study investigated the impact of the 2016 Marine …
threatened by climate change. This study investigated the impact of the 2016 Marine …