Protein Data Bank (PDB): the single global macromolecular structure archive

SK Burley, HM Berman, GJ Kleywegt… - … : methods and protocols, 2017 - Springer
Abstract The Protein Data Bank (PDB)––the single global repository of experimentally
determined 3D structures of biological macromolecules and their complexes––was …

Principles for integrative structural biology studies

MP Rout, A Sali - Cell, 2019 - cell.com
Integrative structure determination is a powerful approach to modeling the structures of
biological systems based on data produced by multiple experimental and theoretical …

Protein Data Bank: the single global archive for 3D macromolecular structure data

Nucleic acids research, 2019 - academic.oup.com
Abstract The Protein Data Bank (PDB) is the single global archive of experimentally
determined three-dimensional (3D) structure data of biological macromolecules. Since …

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

PW Rose, A Prlić, A Altunkaya, C Bi… - Nucleic acids …, 2016 - academic.oup.com
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB, http://rcsb. org), the US data center for the global PDB archive, makes PDB data freely …

[HTML][HTML] Integrative structure and functional anatomy of a nuclear pore complex

SJ Kim, J Fernandez-Martinez, I Nudelman, Y Shi… - Nature, 2018 - nature.com
Nuclear pore complexes play central roles as gatekeepers of RNA and protein transport
between the cytoplasm and nucleoplasm. However, their large size and dynamic nature …

MolProbity: more and better reference data for improved all‐atom structure validation

CJ Williams, JJ Headd, NW Moriarty… - Protein …, 2018 - Wiley Online Library
This paper describes the current update on macromolecular model validation services that
are provided at the MolProbity website, emphasizing changes and additions since the …

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

PW Rose, A Prlić, C Bi, WF Bluhm… - Nucleic acids …, 2015 - academic.oup.com
Abstract The RCSB Protein Data Bank (RCSB PDB, http://www. rcsb. org) provides access to
3D structures of biological macromolecules and is one of the leading resources in biology …

RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education

SK Burley, HM Berman, C Christie, JM Duarte… - Protein …, 2018 - Wiley Online Library
Abstract The Protein Data Bank (PDB) is one of two archival resources for experimental data
central to biomedical research and education worldwide (the other key Primary Data Archive …

Overlay databank unlocks data-driven analyses of biomolecules for all

AM Kiirikki, HS Antila, LS Bort, P Buslaev… - Nature …, 2024 - nature.com
Tools based on artificial intelligence (AI) are currently revolutionising many fields, yet their
applications are often limited by the lack of suitable training data in programmatically …

Protein data bank: a comprehensive review of 3D structure holdings and worldwide utilization by researchers, educators, and students

SK Burley, HM Berman, JM Duarte, Z Feng, JW Flatt… - Biomolecules, 2022 - mdpi.com
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB),
funded by the United States National Science Foundation, National Institutes of Health, and …