myExperiment: a repository and social network for the sharing of bioinformatics workflows

CA Goble, J Bhagat, S Aleksejevs… - Nucleic acids …, 2010 - academic.oup.com
Abstract myExperiment (http://www. myexperiment. org) is an online research environment
that supports the social sharing of bioinformatics workflows. These workflows are …

Mobyle: a new full web bioinformatics framework

B Néron, H Ménager, C Maufrais, N Joly… - …, 2009 - academic.oup.com
Motivation: For the biologist, running bioinformatics analyses involves a time-consuming
management of data and tools. Users need support to organize their work, retrieve …

User-level workflow design

AL Lamprecht - Lecture Notes in Computer Science, 2013 - Springer
This book addresses the challenge of user-level workflow design with a particular focus on
the bioinformatics application domain. Towards this aim, it follows a novel, constraint-driven …

Magallanes: a web services discovery and automatic workflow composition tool

J Ríos, J Karlsson, O Trelles - BMC bioinformatics, 2009 - Springer
Background To aid in bioinformatics data processing and analysis, an increasing number of
web-based applications are being deployed. Although this is a positive circumstance in …

Exploring Data Preparation Modules by Examples

K Belhajjame, M Barhamgi, D Camacho - Asian Conference on Intelligent …, 2024 - Springer
When crafting data-analysis pipelines, a significant challenge lies in pinpointing the
modules suited for data preparation, constituting 80% of such workflows. These versatile …

Annotating the behavior of scientific modules using data examples: A practical approach

K Belhajjame - 17th International Conference on Extending Database …, 2014 - hal.science
A major issue that arises when designing scientific experiments (ie, workflows) is that of
identifying the modules (which are of-ten “black boxes”), that are suitable for performing the …

Interoperability and technology for a language resources factory

M Poch, N Bel Rafecas - … , Technology and Services in the Sharing …, 2011 - repositori.upf.edu
This document describes some of the technological aspects of a project devoted to the
creation of a factory for language resources. The project's objectives are explained, as well …

Bioinformatics applications discovery and composition with the Mobyle suite and Mobylenet

H Ménager, V Gopalan, B Néron, S Larroudé… - … Workshop, RED 2010 …, 2012 - Springer
Given the sheer number of existing analysis tools and data sources, defining and running
bioinformatics analyses is often challenging. We present here the Mobyle framework, a web …

On discovering data preparation modules using examples

K Belhajjame - International Conference on Service-Oriented …, 2020 - Springer
A major issue that arises when designing data-analysis pipelines is that of identifying the
services (or what we refer to as modules in this paper) that are suitable for performing data …

Why the privatisation of public goods might fail: A social dilemma approach

M Van Vugt - Social Psychology Quarterly, 1997 - eprints.soton.ac.uk
This study advanced a social dilemma analysis to examine the role of self-interested and
prosocial concerns in the approval of a real-life structural solution: the privatization of the …