Computational strategies for dissecting the high-dimensional complexity of adaptive immune repertoires

E Miho, A Yermanos, CR Weber, CT Berger… - Frontiers in …, 2018 - frontiersin.org
The adaptive immune system recognizes antigens via an immense array of antigen-binding
antibodies and T-cell receptors, the immune repertoire. The interrogation of immune …

iReceptor: a platform for querying and analyzing antibody/B‐cell and T‐cell receptor repertoire data across federated repositories

BD Corrie, N Marthandan, B Zimonja… - Immunological …, 2018 - Wiley Online Library
Next‐generation sequencing allows the characterization of the adaptive immune receptor
repertoire (AIRR) in exquisite detail. These large‐scale AIRR‐seq data sets have rapidly …

[HTML][HTML] A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

DJ Ahern, Z Ai, M Ainsworth, C Allan, A Allcock… - Cell, 2022 - cell.com
Treatment of severe COVID-19 is currently limited by clinical heterogeneity and incomplete
description of specific immune biomarkers. We present here a comprehensive multi-omic …

Lactobacillus reuteri induces gut intraepithelial CD4+CD8αα+ T cells

L Cervantes-Barragan, JN Chai, MD Tianero… - Science, 2017 - science.org
The small intestine contains CD4+ CD8αα+ double-positive intraepithelial lymphocytes (DP
IELs), which originate from intestinal CD4+ T cells through down-regulation of the …

Analysis of the B cell receptor repertoire in six immune-mediated diseases

RJM Bashford-Rogers, L Bergamaschi, EF McKinney… - Nature, 2019 - nature.com
B cells are important in the pathogenesis of many, and perhaps all, immune-mediated
diseases. Each B cell expresses a single B cell receptor (BCR), and the diverse range of …

IMGT®, the international ImMunoGeneTics information system® 25 years on

MP Lefranc, V Giudicelli, P Duroux… - Nucleic acids …, 2015 - academic.oup.com
IMGT®, the international ImMunoGeneTics information system®(http://www. imgt. org) is the
global reference in immunogenetics and immunoinformatics. By its creation in 1989 by …

IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized VJ and VDJ sequence analysis

X Brochet, MP Lefranc, V Giudicelli - Nucleic acids research, 2008 - academic.oup.com
Abstract IMGT/V-QUEST is the highly customized and integrated system for the standardized
analysis of the immunoglobulin (IG) and T cell receptor (TR) rearranged nucleotide …

IMGT® Tools for the Nucleotide Analysis of Immunoglobulin (IG) and T Cell Receptor (TR) V-(D)-J Repertoires, Polymorphisms, and IG Mutations: IMGT/V-QUEST …

E Alamyar, P Duroux, MP Lefranc… - … : Methods and Applications …, 2012 - Springer
Abstract IMGT/V-QUEST is the highly customized and integrated online IMGT® tool for the
standardized analysis of the immunoglobulin (IG) or antibody and T cell receptor (TR) …

IMGT®, the international ImMunoGeneTics information system®

MP Lefranc, V Giudicelli, C Ginestoux… - Nucleic acids …, 2009 - academic.oup.com
IMGT®, the international ImMunoGeneTics information system®(http://www. imgt. org), was
created in 1989 by Marie-Paule Lefranc, Laboratoire d'ImmunoGénétique Moléculaire LIGM …

Self-renewing hematopoietic stem cell is the primary target in pathogenesis of human chronic lymphocytic leukemia

Y Kikushige, F Ishikawa, T Miyamoto, T Shima, S Urata… - Cancer cell, 2011 - cell.com
We report here that in chronic lymphocytic leukemia (CLL), the propensity to generate clonal
B cells has been acquired already at the hematopoietic stem cell (HSC) stage. HSCs …