Discovering riboswitches: the past and the future

K Kavita, RR Breaker - Trends in biochemical sciences, 2023 - cell.com
Riboswitches are structured noncoding RNA domains used by many bacteria to monitor the
concentrations of target ligands and regulate gene expression accordingly. In the past 20 …

RNA structural dynamics as captured by molecular simulations: a comprehensive overview

J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro… - Chemical …, 2018 - ACS Publications
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …

Principles of fluoride toxicity and the cellular response: a review

NR Johnston, SA Strobel - Archives of toxicology, 2020 - Springer
Fluoride is ubiquitously present throughout the world. It is released from minerals, magmatic
gas, and industrial processing, and travels in the atmosphere and water. Exposure to low …

Riboswitch diversity and distribution

PJ McCown, KA Corbino, S Stav, ME Sherlock… - Rna, 2017 - rnajournal.cshlp.org
Riboswitches are commonly used by bacteria to detect a variety of metabolites and ions to
regulate gene expression. To date, nearly 40 different classes of riboswitches have been …

Physiological functions of bacterial “multidrug” efflux pumps

PJF Henderson, C Maher, LDH Elbourne… - Chemical …, 2021 - ACS Publications
Bacterial multidrug efflux pumps have come to prominence in human and veterinary
pathogenesis because they help bacteria protect themselves against the antimicrobials …

A decade of riboswitches

A Serganov, E Nudler - Cell, 2013 - cell.com
Riboswitches were discovered in 2002 in bacteria as RNA-based intracellular sensors of
vitamin derivatives. During the last decade, naturally occurring RNA sensor elements have …

Riboswitches and the RNA world

RR Breaker - Cold Spring Harbor perspectives in biology, 2012 - cshperspectives.cshlp.org
Riboswitches are structured noncoding RNA domains that selectively bind metabolites and
control gene expression (;;). Nearly all examples of the known riboswitches reside in …

Riboswitches and translation control

RR Breaker - Cold Spring Harbor perspectives in biology, 2018 - cshperspectives.cshlp.org
A growing collection of bacterial riboswitch classes is being discovered that sense central
metabolites, coenzymes, and signaling molecules. Included among the various mechanisms …

Widespread genetic switches and toxicity resistance proteins for fluoride

JL Baker, N Sudarsan, Z Weinberg, A Roth… - Science, 2012 - science.org
Most riboswitches are metabolite-binding RNA structures located in bacterial messenger
RNAs where they control gene expression. We have discovered a riboswitch class in many …

Prospects for riboswitch discovery and analysis

RR Breaker - Molecular cell, 2011 - cell.com
An expanding number of metabolite-binding riboswitch classes are being discovered in the
noncoding portions of bacterial genomes. Findings over the last decade indicate that …