Molecular dynamics simulations have strongly matured as a method to study biomolecular
processes. Their validity, however, is determined by the accuracy of the underlying force …

RNA molecules play a vital role in biological processes within the cell, with significant
implications for science and medicine. Notably, the biological functions exerted by specific …

Many challenges persist in developing accurate computational models for predicting
solvation free energy (Δ G sol). Despite recent developments in Machine Learning (ML) …

Mixed double helices formed by RNA and DNA strands, commonly referred to as hybrid
duplexes or hybrids, are essential in biological processes like transcription and reverse …

Single-stranded RNA (ssRNA) plays a major role in the flow of genetic information–most
notably, in the form of messenger RNA (mRNA)–and in the regulation of biological …

Understanding the dynamic changes of plant biomolecules is vital for exploring their
mechanisms in the environment. Molecular dynamics (MD) simulation has been widely used …

In the past few decades, nanometer-scale pores have been employed as a powerful tool for
sensing biological molecules. In pursuit of this technology, a variety of nanotechnology …

Understanding the function of eukaryotic genomes, including the human genome, is
undoubtedly one of the major scientific challenges of the 21st century. The cornerstone of …

Hybridization of short nucleic acid segments (< 4 nt) to single-strand templates occurs as a
critical intermediate in processes such as nonenzymatic nucleic acid replication and toehold …

Self-splicing ribozymes are small ribonucleic acid (RNA) enzymes that catalyze their own
cleavage through a transphosphoesterification reaction. While this process is involved in …