Tree balance indices: a comprehensive survey

M Fischer, L Herbst, S Kersting, L Kühn… - arXiv preprint arXiv …, 2021 - arxiv.org
Tree balance plays an important role in phylogenetics and other research areas, which is
why several indices to measure tree balance have been introduced over the years …

Charles Darwin's Origin of Species, directional selection, and the evolutionary sciences today

U Kutschera - Naturwissenschaften, 2009 - Springer
Abstract The book On the Origin of Species, published in November 1859, is an “abstract”
without references, compiled by Charles Darwin from a much longer manuscript entitled …

Rapid evolution of SARS-CoV-2 challenges human defenses

CM Duarte, DI Ketcheson, VM Eguíluz, S Agustí… - Scientific Reports, 2022 - nature.com
The race between pathogens and their hosts is a major evolutionary driver, where both
reshuffle their genomes to overcome and reorganize the defenses for infection, respectively …

Phylogenetic diversity theory sheds light on the structure of microbial communities

JP O'Dwyer, SW Kembel, JL Green - PLoS computational biology, 2012 - journals.plos.org
Microbial communities are typically large, diverse, and complex, and identifying and
understanding the processes driving their structure has implications ranging from ecosystem …

The shape of mammalian phylogeny: patterns, processes and scales

A Purvis, SA Fritz, J Rodríguez… - … Transactions of the …, 2011 - royalsocietypublishing.org
Mammalian phylogeny is far too asymmetric for all contemporaneous lineages to have had
equal chances of diversifying. We consider this asymmetry or imbalance from four …

From the scala naturae to the symbiogenetic and dynamic tree of life

U Kutschera - Biology direct, 2011 - Springer
All living beings on Earth, from bacteria to humans, are connected through descent from
common ancestors and represent the summation of their corresponding, ca. 3500 million …

The major features of macroevolution

LF Henao-Diaz, M Pennell - Systematic Biology, 2023 - academic.oup.com
Evolutionary dynamics operating across deep time leave footprints in the shapes of
phylogenetic trees. For the last several decades, researchers have used increasingly large …

Hierarchicality of trade flow networks reveals complexity of products

P Shi, J Zhang, B Yang, J Luo - PloS one, 2014 - journals.plos.org
With globalization, countries are more connected than before by trading flows, which
amounts to at least trillion dollars today. Interestingly, around percents of exports consist of …

Philosophy of thermodynamics

A Annila - … Transactions of the Royal Society A, 2023 - royalsocietypublishing.org
Thermodynamics is regarded as a universal but not foundational theory because its laws for
macroscopic quantities have not been derived from microscopic entities. Thus, to root …

Scale-invariant topology and bursty branching of evolutionary trees emerge from niche construction

C Xue, Z Liu, N Goldenfeld - Proceedings of the National …, 2020 - National Acad Sciences
Phylogenetic trees describe both the evolutionary process and community diversity. Recent
work has established that they exhibit scale-invariant topology, which quantifies the fact that …