Fourth report on chicken genes and chromosomes 2022

J Smith, JM Alfieri, N Anthony, P Arensburger… - … and genome research, 2023 - karger.com
The chicken continues to hold its position as a leading model organism within many areas of
research, as well as being a major source of protein for human consumption. The First …

Inferring signatures of positive selection in whole-genome sequencing data: an overview of haplotype-based methods

P Abondio, E Cilli, D Luiselli - Genes, 2022 - mdpi.com
Signatures of positive selection in the genome are a characteristic mark of adaptation that
can reveal an ongoing, recent, or ancient response to environmental change throughout the …

High-resolution structural variants catalogue in a large-scale whole genome sequenced bovine family cohort data

YL Lee, M Bosse, H Takeda, GCM Moreira, L Karim… - BMC genomics, 2023 - Springer
Abstract Background Structural variants (SVs) are chromosomal segments that differ
between genomes, such as deletions, duplications, insertions, inversions and …

How structural variants shape avian phenotypes: Lessons from model systems

M Recuerda, L Campagna - Molecular Ecology, 2024 - Wiley Online Library
Despite receiving significant recent attention, the relevance of structural variation (SV) in
driving phenotypic diversity remains understudied, although recent advances in long‐read …

Whole-genome variants dataset of 209 local chickens from China

X Tan, J Zhang, J Dong, M Huang, Q Li, H Wang, L Bai… - Scientific Data, 2024 - nature.com
Compared to commercial chickens, local breeds exhibit better in meat quality and flavour,
but the productivity (eg, growth rate, body weight) of local chicken breeds is rather low …

Both Structural Variant and Single Nucleotide Polymorphism Load Impact Lifetime Fitness in a Threatened Bird Species

KC Stuart, HZ Tan, A Whibley, S Bailey… - Molecular …, 2024 - Wiley Online Library
The field of conservation genomics is becoming increasingly interested in whether, and how,
structural variant (SV) genotype information can be leveraged in the management of …

Integration of Whole-Genome Resequencing and Transcriptome Sequencing Reveals Candidate Genes in High Glossiness of Eggshell

X Song, S Li, S He, H Zheng, R Li, L Liu, T Geng… - Animals, 2024 - mdpi.com
Simple Summary Eggshell gloss is an important characteristic for the manifestation of
eggshell appearance. However, the reason for differences in eggshell glossiness is still …

[HTML][HTML] 基于全基因组重测序研究文昌鸡产蛋性能的影响因素

任钰为, 陈星, 林燕宁, 黄潇仙, 洪玲玲, 王峰, 孙瑞萍… - 畜牧兽医学报, 2024 - html.rhhz.net
旨在通过研究文昌鸡进化过程的特征, 深入理解影响产蛋性能的因素, 为文昌鸡优良品种选育
提供基础. 本研究采集35 只健康文昌鸡(35 周龄, 15 公, 20 母) 和30 只健康江汉鸡(35 周龄, 10 …

The big challenge for livestock genomics is to make sequence data pay

M Johnsson - Peer Community Journal, 2023 - peercommunityjournal.org
This paper will argue that one of the biggest challenges for livestock genomics is to make
whole-genome sequencing and functional genomics applicable to breeding practice. It …

High-resolution structural variation catalogue in a large-scale whole genome sequenced bovine family cohort data

YL Lee, M Bosse, H Takeda, GCM Moreira, L Karim… - 2022 - researchsquare.com
Background Structural variations (SVs) are chromosomal segments that differ between
genomes, such as deletions, duplications, insertions, inversions and translocations. The …