DFT calculations in solution systems: solvation energy, dispersion energy and entropy
SC Liu, XR Zhu, DY Liu, DC Fang - Physical Chemistry Chemical …, 2023 - pubs.rsc.org
DFT calculations of reaction mechanisms in solution have always been a hot topic,
especially for transition-metal-catalyzed reactions. The calculation of solvation energy is …
especially for transition-metal-catalyzed reactions. The calculation of solvation energy is …
Design, parameterization, and implementation of atomic force fields for adsorption in nanoporous materials
Molecular simulations are an excellent tool to study adsorption and diffusion in nanoporous
materials. Examples of nanoporous materials are zeolites, carbon nanotubes, clays, metal …
materials. Examples of nanoporous materials are zeolites, carbon nanotubes, clays, metal …
In silico identification of Tretinoin as a SARS-CoV-2 envelope (E) protein ion channel inhibitor
D Dey, S Borkotoky, M Banerjee - Computers in biology and medicine, 2020 - Elsevier
Viroporins are oligomeric, pore forming, viral proteins that play critical roles in the life cycle
of pathogenic viruses. Viroporins like HIV-1 Vpu, Alphavirus 6 K, Influenza M2, HCV p7, and …
of pathogenic viruses. Viroporins like HIV-1 Vpu, Alphavirus 6 K, Influenza M2, HCV p7, and …
Extraction of material properties through multi-fidelity deep learning from molecular dynamics simulation
Simulation of reasonable timescales for any long physical process using molecular
dynamics (MD) is a major challenge in computational physics. In this study, we have …
dynamics (MD) is a major challenge in computational physics. In this study, we have …
The impact of mechanical vibration at cathode on hydrogen yields in water electrolysis
This study investigates the utilization of mechanical vibration to enhance the hydrogen
evolution reaction (HER) in electrolysis processes. By varying the force magnitude and …
evolution reaction (HER) in electrolysis processes. By varying the force magnitude and …
Computational investigation of Moringa oleifera phytochemicals targeting EGFR: molecular docking, molecular dynamics simulation and density functional theory …
MA Yousaf, SA Anwer, S Basheera… - Journal of Biomolecular …, 2024 - Taylor & Francis
Epidermal growth factor receptor (EGFR) is a prominent target for anticancer therapy due to
its role in activating several cell signaling cascades. Clinically approved EGFR inhibitors are …
its role in activating several cell signaling cascades. Clinically approved EGFR inhibitors are …
The MolSSI driver interface project: A framework for standardized, on-the-fly interoperability between computational molecular sciences codes
TA Barnes, E Marin-Rimoldi, S Ellis… - Computer Physics …, 2021 - Elsevier
Abstract The MolSSI Driver Interface (MDI) Project provides a standardized API for fast, on-
the-fly communication between computational molecular sciences codes. This greatly …
the-fly communication between computational molecular sciences codes. This greatly …
[HTML][HTML] Prediction of Dielectric Constant in Series of Polymers by Quantitative Structure-Property Relationship (QSPR)
This work is devoted to the investigation of dielectric permittivity which is influenced by
electronic, ionic, and dipolar polarization mechanisms, contributing to the material's capacity …
electronic, ionic, and dipolar polarization mechanisms, contributing to the material's capacity …
Inhibition of Monkeypox Virus DNA Polymerase Using Moringa oleifera Phytochemicals: Computational Studies of Drug-Likeness, Molecular Docking, Molecular …
MA Yousaf, S Basheera, S Sivanandan - Indian Journal of Microbiology, 2024 - Springer
The emergence of zoonotic monkeypox (MPX) disease, caused by the double-stranded
DNA monkeypox virus (MPXV), has become a global threat. Due to unavailability of a …
DNA monkeypox virus (MPXV), has become a global threat. Due to unavailability of a …
[HTML][HTML] SAMPL9 blind predictions for toluene/water partition coefficients using nonequilibrium alchemical approaches
P Procacci, G Guarnieri - The Journal of Chemical Physics, 2023 - pubs.aip.org
We present our blind prediction of the toluene–water partition coefficients in the context of
the SAMPL9 challenge. For the calculation of the solvation free energies in water, toluene …
the SAMPL9 challenge. For the calculation of the solvation free energies in water, toluene …