Data integration challenges for machine learning in precision medicine
M Martínez-García, E Hernández-Lemus - Frontiers in medicine, 2022 - frontiersin.org
A main goal of Precision Medicine is that of incorporating and integrating the vast corpora on
different databases about the molecular and environmental origins of disease, into analytic …
different databases about the molecular and environmental origins of disease, into analytic …
A conceptual model for geo-online exploratory data visualization: The case of the covid-19 pandemic
A Bernasconi, S Grandi - Information, 2021 - mdpi.com
Responding to the recent COVID-19 outbreak, several organizations and private citizens
considered the opportunity to design and publish online explanatory data visualization tools …
considered the opportunity to design and publish online explanatory data visualization tools …
Exploiting Omic-based Approaches to Decipher Traditional Chinese Medicine
L Li, Y Guan, Y Du, Z Chen, H Xie, K Lu, J Kang… - Journal of …, 2024 - Elsevier
Abstract Ethnopharmacological relevance Traditional Chinese Medicine (TCM), an ancient
health system, faces significant research challenges due to the complexity of its active …
health system, faces significant research challenges due to the complexity of its active …
Empowering virus sequence research through conceptual modeling
The pandemic outbreak of the coronavirus disease has attracted attention towards the
genetic mechanisms of viruses. We hereby present the Viral Conceptual Model (VCM) …
genetic mechanisms of viruses. We hereby present the Viral Conceptual Model (VCM) …
GeCoAgent: a conversational agent for empowering genomic data extraction and analysis
With the availability of reliable and low-cost DNA sequencing, human genomics is relevant
to a growing number of end-users, including biologists and clinicians. Typical interactions …
to a growing number of end-users, including biologists and clinicians. Typical interactions …
GeMI: interactive interface for transformer-based Genomic Metadata Integration
Abstract The Gene Expression Omnibus (GEO) is a public archive containing> 4 million
digital samples from functional genomics experiments collected over almost two decades …
digital samples from functional genomics experiments collected over almost two decades …
[HTML][HTML] Data quality-aware genomic data integration
A Bernasconi - Computer Methods and Programs in Biomedicine …, 2021 - Elsevier
Genomic data are growing at unprecedented pace, along with new protocols, update
polices, formats and guidelines, terminologies and ontologies, which are made available …
polices, formats and guidelines, terminologies and ontologies, which are made available …
Transfer learning compensates limited data, batch effects and technological heterogeneity in single-cell sequencing
Tremendous advances in next-generation sequencing technology have enabled the
accumulation of large amounts of omics data in various research areas over the past …
accumulation of large amounts of omics data in various research areas over the past …
[HTML][HTML] PoliViews: A comprehensive and modular approach to the conceptual modeling of genomic data
The human genome complexity is captured by many signals, representing for instance DNA
variations, the expression of gene activity, or DNA's structural rearrangements; a rich set of …
variations, the expression of gene activity, or DNA's structural rearrangements; a rich set of …
A comprehensive approach for the conceptual modeling of genomic data
The human genome is traditionally represented as a DNA sequence of three billion base
pairs. However, its intricacies are captured by many more complex signals, representing …
pairs. However, its intricacies are captured by many more complex signals, representing …