Patterns of selection across gene regulatory networks
JMC McDonald, RD Reed - Seminars in Cell & Developmental Biology, 2023 - Elsevier
Gene regulatory networks (GRNs) are the core engine of organismal development. If we
would like to understand the origin and diversification of phenotypes, it is necessary to …
would like to understand the origin and diversification of phenotypes, it is necessary to …
Responses to commentaries on “The gene: An appraisal”
K Baverstock - Progress in Biophysics and Molecular Biology, 2024 - Elsevier
The central conclusions of “The Gene: An Appraisal” are that genetic variance does not
underpin biological evolution, and, therefore, that genes are not Mendel's units of …
underpin biological evolution, and, therefore, that genes are not Mendel's units of …
Evolution in two parts: as seen in a new framework for biology
K Baverstock - THEORETICAL BIOLOGY, 2022 - torrossa.com
The case has been made that the gene-centric approach to biology, which has prevailed
over the past~ 100 years, should be replaced by a fundamental framework based on the cell …
over the past~ 100 years, should be replaced by a fundamental framework based on the cell …
Investigating the Development of Alcohol Tolerance in the ESKAPE Pathogens
H Durkee - 2024 - digitalcommons.wcupa.edu
Antiseptics and disinfectants are used globally to kill or inhibit the growth of bacteria to
prevent infection. Considering the well-documented development of antibiotic resistance …
prevent infection. Considering the well-documented development of antibiotic resistance …
Idiosyncratic Purifying Selection on Metabolic Enzymes in the Long-Term Evolution Experiment with Escherichia coli
R Maddamsetti - Genome Biology and Evolution, 2022 - academic.oup.com
Abstract Bacteria, Archaea, and Eukarya all share a common set of metabolic reactions. This
implies that the function and topology of central metabolism has been evolving under …
implies that the function and topology of central metabolism has been evolving under …
Discovery of positive and purifying selection in metagenomic time series of hypermutator microbial populations
R Maddamsetti, NA Grant - PLoS genetics, 2022 - journals.plos.org
A general method to infer both positive and purifying selection during the real-time evolution
of hypermutator pathogens would be broadly useful. To this end, we introduce a Simple Test …
of hypermutator pathogens would be broadly useful. To this end, we introduce a Simple Test …
Evolution Enhanced Resilience of Protein Interaction Networks
J Zhang, D Ding - 2022 21st International Symposium on …, 2022 - ieeexplore.ieee.org
Most biological functions are presented through protein-protein interaction (PPI) networks.
PPI networks show the complex protein-protein interaction relationship within the organism …
PPI networks show the complex protein-protein interaction relationship within the organism …