The advantages and disadvantages of being polyploid

L Comai - Nature reviews genetics, 2005 - nature.com
Polyploids—organisms that have multiple sets of chromosomes—are common in certain
plant and animal taxa, and can be surprisingly stable. The evidence that has emerged from …

Duplication and divergence: the evolution of new genes and old ideas

JS Taylor, J Raes - Annu. Rev. Genet., 2004 - annualreviews.org
▪ Abstract Over 35 years ago, Susumu Ohno stated that gene duplication was the single
most important factor in evolution. He reiterated this point a few years later in proposing that …

Two rounds of whole genome duplication in the ancestral vertebrate

P Dehal, JL Boore - PLoS biology, 2005 - journals.plos.org
The hypothesis that the relatively large and complex vertebrate genome was created by two
ancient, whole genome duplications has been hotly debated, but remains unresolved. We …

Genome evolution in yeasts

B Dujon, D Sherman, G Fischer, P Durrens… - Nature, 2004 - nature.com
Identifying the mechanisms of eukaryotic genome evolution by comparative genomics is
often complicated by the multiplicity of events that have taken place throughout the history of …

Genome-scale approaches to resolving incongruence in molecular phylogenies

A Rokas, BL Williams, N King, SB Carroll - Nature, 2003 - nature.com
One of the most pervasive challenges in molecular phylogenetics is the incongruence
between phylogenies obtained using different data sets, such as individual genes. To …

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

M Kellis, BW Birren, ES Lander - Nature, 2004 - nature.com
Whole-genome duplication followed by massive gene loss and specialization has long been
postulated as a powerful mechanism of evolutionary innovation. Recently, it has become …

Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

G Blanc, KH Wolfe - The plant cell, 2004 - academic.oup.com
It is often anticipated that many of today's diploid plant species are in fact paleopolyploids.
Given that an ancient large-scale duplication will result in an excess of relatively old …

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

G Blanc, KH Wolfe - The Plant Cell, 2004 - academic.oup.com
To study the evolutionary effects of polyploidy on plant gene functions, we analyzed
functional genomics data for a large number of duplicated gene pairs formed by ancient …

Immunity-Related Genes and Gene Families in Anopheles gambiae

GK Christophides, E Zdobnov, C Barillas-Mury… - Science, 2002 - science.org
We have identified 242 Anopheles gambiae genes from 18 gene families implicated in
innate immunity and have detected marked diversification relative to Drosophila …

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

KP Byrne, KH Wolfe - Genome research, 2005 - genome.cshlp.org
We developed the Yeast Gene Order Browser (YGOB; http://wolfe. gen. tcd. ie/ygob) to
facilitate visual comparisons and computational analysis of synteny relationships in yeasts …