Pathway to Synthesis and Processing of Mycolic Acids in Mycobacterium tuberculosis

K Takayama, C Wang, GS Besra - Clinical microbiology reviews, 2005 - Am Soc Microbiol
Mycobacterium tuberculosis is known to synthesize α-, methoxy-, and keto-mycolic acids.
We propose a detailed pathway to the biosynthesis of all mycolic acids in M. tuberculosis …

Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis

MR Farhat, BJ Shapiro, KJ Kieser, R Sultana… - Nature …, 2013 - nature.com
M. tuberculosis is evolving antibiotic resistance, threatening attempts at tuberculosis
epidemic control. Mechanisms of resistance, including genetic changes favored by selection …

Weighted graph cuts without eigenvectors a multilevel approach

IS Dhillon, Y Guan, B Kulis - IEEE transactions on pattern …, 2007 - ieeexplore.ieee.org
A variety of clustering algorithms have recently been proposed to handle data that is not
linearly separable; spectral clustering and kernel k-means are two of the main methods. In …

Toward the structural genomics of complexes: Crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis

M Strong, MR Sawaya, S Wang… - Proceedings of the …, 2006 - National Acad Sciences
The developing science called structural genomics has focused to date mainly on high-
throughput expression of individual proteins, followed by their purification and structure …

[PDF][PDF] The" chemoinvasion assay": a tool to study tumor and endothelial cell invasion of basement membranes

A Albini, R Benelli, DM Noonan… - International Journal of …, 2004 - academia.edu
Several genetic and epigenetic factors, both in the cell and in the host, contribute to the
progression of tumors towards metastases. The escape of cancer cells from a primary …

[PDF][PDF] Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps

E Nabieva, K Jim, A Agarwal, B Chazelle, M Singh - Bioinformatics, 2005 - Citeseer
Motivation: Determining protein function is one of the most important problems in the post-
genomic era. For the typical proteome, there are no functional annotations for one-third or …

targetTB: A target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis

K Raman, K Yeturu, N Chandra - BMC systems biology, 2008 - Springer
Background Tuberculosis still remains one of the largest killer infectious diseases,
warranting the identification of newer targets and drugs. Identification and validation of …

Unique Transcriptome Signature of Mycobacterium tuberculosis in Pulmonary Tuberculosis

H Rachman, M Strong, T Ulrichs, L Grode… - Infection and …, 2006 - Am Soc Microbiol
Although tuberculosis remains a substantial global threat, the mechanisms that enable
mycobacterial persistence and replication within the human host are ill defined. This study …

[HTML][HTML] Inference of protein function from protein structure

D Pal, D Eisenberg - Structure, 2005 - cell.com
Structural genomics has brought us three-dimensional structures of proteins with unknown
functions. To shed light on such structures, we have developed ProKnow (http://www. doe …

Novel role of phosphorylation-dependent interaction between FtsZ and FipA in mycobacterial cell division

K Sureka, T Hossain, P Mukherjee, P Chatterjee… - PLOS …, 2010 - journals.plos.org
The bacterial divisome is a multiprotein complex. Specific protein-protein interactions specify
whether cell division occurs optimally, or whether division is arrested. Little is known about …