[HTML][HTML] Protein electrostatics: From computational and structural analysis to discovery of functional fingerprints and biotechnological design
F Vascon, M Gasparotto, M Giacomello… - Computational and …, 2020 - Elsevier
Computationally driven engineering of proteins aims to allow them to withstand an extended
range of conditions and to mediate modified or novel functions. Therefore, it is crucial to the …
range of conditions and to mediate modified or novel functions. Therefore, it is crucial to the …
Solvation free energy as a measure of hydrophobicity: application to serine protease binding interfaces
Solvation and hydrophobicity play a key role in a variety of biological mechanisms. In
substrate binding, but also in structure-based drug design, the thermodynamic properties of …
substrate binding, but also in structure-based drug design, the thermodynamic properties of …
Proteolytic Performance Is Dependent on Binding Efficiency, Processivity, and Turnover: Single Protease Insights
EW Sørensen, FB Reinhold, A Faber, S Bender… - ACS …, 2024 - ACS Publications
Proteases are essential enzymes for a plethora of biological processes and biotechnological
applications, eg, within the dairy, pharmaceutical, and detergent industries. Decoding the …
applications, eg, within the dairy, pharmaceutical, and detergent industries. Decoding the …
PEP-patch: electrostatics in protein–protein recognition, specificity, and antibody developability
The electrostatic properties of proteins arise from the number and distribution of polar and
charged residues. Electrostatic interactions in proteins play a critical role in numerous …
charged residues. Electrostatic interactions in proteins play a critical role in numerous …
Lactoferrin impairs pathogen virulence through its proteolytic activity
Antibiotics, often hailed as 'miracle drugs' in the 20th century, have revolutionised medicine
by saving millions of lives in human and veterinary medicine, effectively combatting bacterial …
by saving millions of lives in human and veterinary medicine, effectively combatting bacterial …
Protein-protein binding as a two-step mechanism: Preselection of encounter poses during the binding of BPTI and trypsin
Biomolecular recognition between proteins follows complex mechanisms, the understanding
of which can substantially advance drug discovery efforts. Here, we track each step of the …
of which can substantially advance drug discovery efforts. Here, we track each step of the …
Polyanions cause protein destabilization similar to that in live cells
T Sorensen, S Leeb, J Danielsson, M Oliveberg - Biochemistry, 2021 - ACS Publications
The structural stability of proteins is found to markedly change upon their transfer to the
crowded interior of live cells. For some proteins, the stability increases, while for others, it …
crowded interior of live cells. For some proteins, the stability increases, while for others, it …
Recombinant Production and Characterization of an Extracellular Subtilisin-Like Serine Protease from Acinetobacter baumannii of Fermented Food Origin
NS Muhammed, N Hussin, AS Lim, MA Jonet… - The Protein …, 2021 - Springer
Acinetobacter baumannii is a ubiquitous bacteria that is increasingly becoming a formidable
nosocomial pathogen. Due to its clinical relevance, studies on the bacteria's secretory …
nosocomial pathogen. Due to its clinical relevance, studies on the bacteria's secretory …
PEP-Patch: Electrostatics in Protein-Protein Recognition, Specificity and Antibody Developability
The electrostatic properties of proteins arise from the number and distribution of polar and
charged residues. Due to their long-ranged nature, electrostatic interactions in proteins play …
charged residues. Due to their long-ranged nature, electrostatic interactions in proteins play …
Grid-based state space exploration for molecular binding
H Zupan, F Heinz, BG Keller - Canadian Journal of Chemistry, 2023 - cdnsciencepub.com
Binding processes are difficult to sample with molecular dynamics (MD) simulations. In
particular, the state space exploration is often incomplete. Evaluating the molecular …
particular, the state space exploration is often incomplete. Evaluating the molecular …