An updated review of computer‐aided drug design and its application to COVID‐19

AB Gurung, MA Ali, J Lee, MA Farah… - BioMed research …, 2021 - Wiley Online Library
The recent outbreak of the deadly coronavirus disease 19 (COVID‐19) pandemic poses
serious health concerns around the world. The lack of approved drugs or vaccines continues …

Methodology-centered review of molecular modeling, simulation, and prediction of SARS-CoV-2

K Gao, R Wang, J Chen, L Cheng, J Frishcosy… - Chemical …, 2022 - ACS Publications
Despite tremendous efforts in the past two years, our understanding of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), virus–host interactions, immune …

COVID-19 X-ray image segmentation by modified whale optimization algorithm with population reduction

S Chakraborty, AK Saha, S Nama, S Debnath - Computers in Biology and …, 2021 - Elsevier
Abstract Coronavirus disease 2019 (COVID-19) has caused a massive disaster in every
human life field, including health, education, economics, and tourism, over the last year and …

Benchmarking the ability of common docking programs to correctly reproduce and score binding modes in SARS-CoV-2 protease Mpro

S Zev, K Raz, R Schwartz, R Tarabeh… - Journal of Chemical …, 2021 - ACS Publications
The coronavirus SARS-CoV-2 main protease, Mpro, is conserved among coronaviruses with
no human homolog and has therefore attracted significant attention as an enzyme drug …

[HTML][HTML] Antiviral peptides against the main protease of SARS-CoV-2: A molecular docking and dynamics study

S Mahmud, S Biswas, GK Paul, MA Mita… - Arabian journal of …, 2021 - Elsevier
The recent coronavirus outbreak has changed the world's economy and health sectors due
to the high mortality and transmission rates. Because the development of new effective …

Impact of Early Pandemic Stage Mutations on Molecular Dynamics of SARS-CoV-2 Mpro

O Sheik Amamuddy, GM Verkhivker… - Journal of chemical …, 2020 - ACS Publications
A new coronavirus (SARS-CoV-2) is a global threat to world health and economy. Its dimeric
main protease (Mpro), which is required for the proteolytic cleavage of viral precursor …

[HTML][HTML] Comparison of the binding energies of approved mpox drugs and phytochemicals through molecular docking, molecular dynamics simulation, and ADMET …

RK Mohapatra, A Mahal, A Ansari, M Kumar… - Journal of Biosafety and …, 2023 - Elsevier
The mpox (previously monkeypox) outbreak in more than 100 non-endemic countries in
2022 posed a serious global health concern. Mpox is emerging as a global public health …

Machine learning reveals the critical interactions for SARS-CoV-2 spike protein binding to ACE2

A Pavlova, Z Zhang, A Acharya, DL Lynch… - The journal of …, 2021 - ACS Publications
SARS-CoV and SARS-CoV-2 bind to the human ACE2 receptor in practically identical
conformations, although several residues of the receptor-binding domain (RBD) differ …

[HTML][HTML] Inhibitor binding influences the protonation states of histidines in SARS-CoV-2 main protease

A Pavlova, DL Lynch, I Daidone, L Zanetti-Polzi… - Chemical …, 2021 - pubs.rsc.org
The main protease (Mpro) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-
2) is an attractive target for antiviral therapeutics. Recently, many high-resolution apo and …

[HTML][HTML] Phytocompounds of Rheum emodi, Thymus serpyllum, and Artemisia annua Inhibit Spike Protein of SARS-CoV-2 Binding to ACE2 Receptor: In Silico …

R Rolta, D Salaria, PP Sharma, B Sharma… - Current pharmacology …, 2021 - Springer
COVID-19, the disease caused by SARS-CoV-2, has been declared as a global pandemic.
Traditional medicinal plants have long history to treat viral infections. Our in silico approach …