Recent structural insights into cytochrome P450 function

FP Guengerich, MR Waterman, M Egli - Trends in pharmacological …, 2016 - cell.com
Cytochrome P450 (P450) enzymes are important in the metabolism of drugs, steroids, fat-
soluble vitamins, carcinogens, pesticides, and many other types of chemicals. Their catalytic …

Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently

A Currin, N Swainston, PJ Day, DB Kell - Chemical Society Reviews, 2015 - pubs.rsc.org
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …

Olefin cyclopropanation via carbene transfer catalyzed by engineered cytochrome P450 enzymes

PS Coelho, EM Brustad, A Kannan, FH Arnold - Science, 2013 - science.org
Transition metal–catalyzed transfers of carbenes, nitrenes, and oxenes are powerful
methods for functionalizing C= C and C–H bonds. Nature has evolved a diverse toolbox for …

Stabilizing biocatalysts

AS Bommarius, MF Paye - Chemical Society Reviews, 2013 - pubs.rsc.org
The area of biocatalysis itself is in rapid development, fueled by both an enhanced
repertoire of protein engineering tools and an increasing list of solved problems …

Exploring protein fitness landscapes by directed evolution

PA Romero, FH Arnold - Nature reviews Molecular cell biology, 2009 - nature.com
Directed evolution circumvents our profound ignorance of how a protein's sequence
encodes its function by using iterative rounds of random mutation and artificial selection to …

P450 BM3 (CYP102A1): connecting the dots

CJC Whitehouse, SG Bell, LL Wong - Chemical Society Reviews, 2012 - pubs.rsc.org
P450BM3 (CYP102A1), a fatty acid hydroxylase from Bacillus megaterium, has been
extensively studied over a period of almost forty years. The enzyme has been redesigned to …

[HTML][HTML] Adaptive machine learning for protein engineering

BL Hie, KK Yang - Current opinion in structural biology, 2022 - Elsevier
Abstract Machine-learning models that learn from data to predict how protein sequence
encodes function are emerging as a useful protein engineering tool. However, when using …

Beyond directed evolution—semi-rational protein engineering and design

S Lutz - Current opinion in biotechnology, 2010 - Elsevier
Over the past two decades, directed evolution has transformed the field of protein
engineering. The advances in understanding protein structure and function, in no …

Navigating the protein fitness landscape with Gaussian processes

PA Romero, A Krause… - Proceedings of the …, 2013 - National Acad Sciences
Knowing how protein sequence maps to function (the “fitness landscape”) is critical for
understanding protein evolution as well as for engineering proteins with new and useful …

Cytochrome P450 monooxygenases: an update on perspectives for synthetic application

VB Urlacher, M Girhard - Trends in biotechnology, 2012 - cell.com
Cytochrome P450 monooxygenases (P450s) are versatile biocatalysts that catalyze the
regio-and stereospecic oxidation of non-activated hydrocarbons under mild conditions …