Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
Abstract The Human BioMolecular Atlas Program (HuBMAP) aims to create a multi-scale
spatial atlas of the healthy human body at single-cell resolution by applying advanced …
spatial atlas of the healthy human body at single-cell resolution by applying advanced …
Challenges in unsupervised clustering of single-cell RNA-seq data
Single-cell RNA sequencing (scRNA-seq) allows researchers to collect large catalogues
detailing the transcriptomes of individual cells. Unsupervised clustering is of central …
detailing the transcriptomes of individual cells. Unsupervised clustering is of central …
ImmPort, toward repurposing of open access immunological assay data for translational and clinical research
S Bhattacharya, P Dunn, CG Thomas, B Smith… - Scientific data, 2018 - nature.com
Immunology researchers are beginning to explore the possibilities of reproducibility, reuse
and secondary analyses of immunology data. Open-access datasets are being applied in …
and secondary analyses of immunology data. Open-access datasets are being applied in …
Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods
Single-cell transcriptomics can profile thousands of cells in a single experiment and identify
novel cell types, states and dynamics in a wide variety of tissues and organisms. Standard …
novel cell types, states and dynamics in a wide variety of tissues and organisms. Standard …
An integrated expression atlas of miRNAs and their promoters in human and mouse
MicroRNAs (miRNAs) are short non-coding RNAs with key roles in cellular regulation. As
part of the fifth edition of the Functional Annotation of Mammalian Genome (FANTOM5) …
part of the fifth edition of the Functional Annotation of Mammalian Genome (FANTOM5) …
A census of the lung: CellCards from LungMAP
The human lung plays vital roles in respiration, host defense, and basic physiology. Recent
technological advancements such as single-cell RNA sequencing and genetic lineage …
technological advancements such as single-cell RNA sequencing and genetic lineage …
A draft network of ligand–receptor-mediated multicellular signalling in human
Cell-to-cell communication across multiple cell types and tissues strictly governs proper
functioning of metazoans and extensively relies on interactions between secreted ligands …
functioning of metazoans and extensively relies on interactions between secreted ligands …
An atlas of human long non-coding RNAs with accurate 5′ ends
Long non-coding RNAs (lncRNAs) are largely heterogeneous and functionally
uncharacterized. Here, using FANTOM5 cap analysis of gene expression (CAGE) data, we …
uncharacterized. Here, using FANTOM5 cap analysis of gene expression (CAGE) data, we …
A promoter-level mammalian expression atlas
Nature, 2014 - nature.com
Regulated transcription controls the diversity, developmental pathways and spatial
organization of the hundreds of cell types that make up a mammal. Using single-molecule …
organization of the hundreds of cell types that make up a mammal. Using single-molecule …
The GOA database: gene ontology annotation updates for 2015
RP Huntley, T Sawford… - Nucleic acids …, 2015 - academic.oup.com
Abstract The Gene Ontology Annotation (GOA) resource (http://www. ebi. ac. uk/GOA)
provides evidence-based Gene Ontology (GO) annotations to proteins in the UniProt …
provides evidence-based Gene Ontology (GO) annotations to proteins in the UniProt …