Machine learning in prediction of intrinsic aqueous solubility of drug‐like compounds: Generalization, complexity, or predictive ability?

M Lovrić, K Pavlović, P Žuvela, A Spataru… - Journal of …, 2021 - Wiley Online Library
We present a collection of publicly available intrinsic aqueous solubility data of 829 drug‐
like compounds. Four different machine learning algorithms (random forests [RF], LightGBM …

[HTML][HTML] In silico prediction of the toxicity of nitroaromatic compounds: Application of ensemble learning qsar approach

A Daghighi, GM Casanola-Martin, T Timmerman… - Toxics, 2022 - mdpi.com
In this work, a dataset of more than 200 nitroaromatic compounds is used to develop
Quantitative Structure–Activity Relationship (QSAR) models for the estimation of in vivo …

[HTML][HTML] Prediction models of early childhood caries based on machine learning algorithms

YH Park, SH Kim, YY Choi - International Journal of Environmental …, 2021 - mdpi.com
In this study, we developed machine learning-based prediction models for early childhood
caries and compared their performances with the traditional regression model. We analyzed …

[HTML][HTML] Prediction of drug-induced liver toxicity using SVM and optimal descriptor sets

K Jaganathan, H Tayara, KT Chong - International Journal of Molecular …, 2021 - mdpi.com
Drug-induced liver toxicity is one of the significant safety challenges for the patient's health
and the pharmaceutical industry. It causes termination of drug candidates in clinical trials …

[HTML][HTML] Machine Learning for Evaluating the Cytotoxicity of Mixtures of Nano-TiO2 and Heavy Metals: QSAR Model Apply Random Forest Algorithm after Clustering …

L Sang, Y Wang, C Zong, P Wang, H Zhang, D Guo… - Molecules, 2022 - mdpi.com
With the development and application of nanomaterials, their impact on the environment and
organisms has attracted attention. As a common nanomaterial, nano-titanium dioxide (nano …

[HTML][HTML] Should we embed in chemistry? A comparison of unsupervised transfer learning with PCA, UMAP, and VAE on molecular fingerprints

M Lovrić, T Đuričić, HTN Tran, H Hussain, E Lacić… - Pharmaceuticals, 2021 - mdpi.com
Methods for dimensionality reduction are showing significant contributions to knowledge
generation in high-dimensional modeling scenarios throughout many disciplines. By …

[HTML][HTML] Multi-target in silico prediction of inhibitors for mitogen-activated protein kinase-interacting kinases

AK Halder, MNDS Cordeiro - Biomolecules, 2021 - mdpi.com
The inhibitors of two isoforms of mitogen-activated protein kinase-interacting kinases (ie,
MNK-1 and MNK-2) are implicated in the treatment of a number of diseases including …

Towards rational nanomaterial design by predicting drug–nanoparticle system interaction vs. bacterial metabolic networks

K Dieguez-Santana, B Rasulev… - Environmental Science …, 2022 - pubs.rsc.org
The emergence of multidrug-resistant (MDR) strains with perturbed metabolic networks
(MNs) pushes researchers to improve antibacterial drugs (ADs). Certain nanoparticles (NPs) …

[HTML][HTML] Transfer learning: making retrosynthetic predictions based on a small chemical reaction dataset scale to a new level

R Bai, C Zhang, L Wang, C Yao, J Ge, H Duan - Molecules, 2020 - mdpi.com
Effective computational prediction of complex or novel molecule syntheses can greatly help
organic and medicinal chemistry. Retrosynthetic analysis is a method employed by chemists …

[HTML][HTML] Adherence to Mediterranean diet and maternal lifestyle during pregnancy: Island–mainland differentiation in the CRIBS Birth Cohort

D Havaš Auguštin, J Šarac, M Lovrić, J Živković… - Nutrients, 2020 - mdpi.com
Maternal nutrition and lifestyle in pregnancy are important modifiable factors for both
maternal and offspring's health. Although the Mediterranean diet has beneficial effects on …