Group II introns: mobile ribozymes that invade DNA

AM Lambowitz, S Zimmerly - Cold Spring Harbor …, 2011 - cshperspectives.cshlp.org
Group II introns are mobile ribozymes that self-splice from precursor RNAs to yield excised
intron lariat RNAs, which then invade new genomic DNA sites by reverse splicing. The …

[HTML][HTML] Nucleic acid catalysis: metals, nucleobases, and other cofactors

WL Ward, K Plakos, VJ DeRose - Chemical reviews, 2014 - ACS Publications
The discovery of RNA-catalyzed phosphodiester bond cleavage by Cech and Altman in
1982− 1983 shattered the paradigm of protein-dependent biological catalysis and opened …

Crystal structure of a self-spliced group II intron

N Toor, KS Keating, SD Taylor, AM Pyle - Science, 2008 - science.org
Group II introns are self-splicing ribozymes that catalyze their own excision from precursor
transcripts and insertion into new genetic locations. Here we report the crystal structure of an …

Synthesis, properties, and applications of oligonucleotides containing an RNA dinucleotide phosphorothiolate linkage

NS Li, JK Frederiksen, JA Piccirilli - Accounts of chemical …, 2011 - ACS Publications
RNA represents a prominent class of biomolecules. Present in all living systems, RNA plays
many essential roles in gene expression, regulation, and development. Accordingly, many …

Unraveling the structure and biological functions of RNA triple helices

JA Brown - Wiley Interdisciplinary Reviews: RNA, 2020 - Wiley Online Library
It has been nearly 63 years since the first characterization of an RNA triple helix in vitro by
Gary Felsenfeld, David Davies, and Alexander Rich. An RNA triple helix consists of three …

A 1.9 Å crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage

JH Chen, R Yajima, DM Chadalavada, E Chase… - Biochemistry, 2010 - ACS Publications
The hepatitis delta virus (HDV) ribozyme and HDV-like ribozymes are self-cleaving RNAs
found throughout all kingdoms of life. These RNAs fold into a double-nested pseudoknot …

Evidence for a group II intron–like catalytic triplex in the spliceosome

SM Fica, MA Mefford, JA Piccirilli… - Nature structural & …, 2014 - nature.com
To catalyze pre-mRNA splicing, U6 small nuclear RNA positions two metals that interact
directly with the scissile phosphates. U6 metal ligands correspond stereospecifically to metal …

The tertiary structure of group II introns: implications for biological function and evolution

AM Pyle - Critical reviews in biochemistry and molecular biology, 2010 - Taylor & Francis
Group II introns are some of the largest ribozymes in nature, and they are a major source of
information about RNA assembly and tertiary structural organization. These introns are of …

Controlling ribozyme activity by metal ions

J Schnabl, RKO Sigel - Current opinion in chemical biology, 2010 - Elsevier
The observed rates of ribozyme cleavage reactions are strongly dependent on the nature of
the metal ion present. Metal ions can thereby exhibit a stronger inhibiting or accelerating …

The potential versatility of RNA catalysis

TJ Wilson, DMJ Lilley - Wiley Interdisciplinary Reviews: RNA, 2021 - Wiley Online Library
It is commonly thought that in the early development of life on this planet RNA would have
acted both as a store of genetic information and as a catalyst. While a number of RNA …