Bulk segregation analysis in the NGS era: a review of its teenage years

Z Li, Y Xu - The Plant Journal, 2022 - Wiley Online Library
Bulk segregation analysis (BSA) utilizes a strategy of pooling individuals with extreme
phenotypes to conduct economical and rapidly linked marker screening or quantitative trait …

Genomic resources in plant breeding for sustainable agriculture

M Thudi, R Palakurthi, JC Schnable… - Journal of Plant …, 2021 - Elsevier
Climate change during the last 40 years has had a serious impact on agriculture and
threatens global food and nutritional security. From over half a million plant species, cereals …

Genotyping-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding

J He, X Zhao, A Laroche, ZX Lu, HK Liu… - Frontiers in plant …, 2014 - frontiersin.org
Marker-assisted selection (MAS) refers to the use of molecular markers to assist phenotypic
selections in crop improvement. Several types of molecular markers, such as single …

Sequencing pools of individuals—mining genome-wide polymorphism data without big funding

C Schlötterer, R Tobler, R Kofler, V Nolte - Nature Reviews Genetics, 2014 - nature.com
The analysis of polymorphism data is becoming increasingly important as a complementary
tool to classical genetic analyses. Nevertheless, despite plunging sequencing costs …

Arabidopsis FLL2 promotes liquid–liquid phase separation of polyadenylation complexes

X Fang, L Wang, R Ishikawa, Y Li, M Fiedler, F Liu… - Nature, 2019 - nature.com
An important component of cellular biochemistry is the concentration of proteins and nucleic
acids in non-membranous compartments,. These biomolecular condensates are formed …

Identification of factors required for m6A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI

K Růžička, M Zhang, A Campilho, Z Bodi… - New …, 2017 - Wiley Online Library
Summary N6‐adenosine methylation (m6A) of mRNA is an essential process in most
eukaryotes, but its role and the status of factors accompanying this modification are still …

QTL‐seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

H Takagi, A Abe, K Yoshida, S Kosugi… - The Plant …, 2013 - Wiley Online Library
The majority of agronomically important crop traits are quantitative, meaning that they are
controlled by multiple genes each with a small effect (quantitative trait loci, QTL s). Mapping …

Tomato facultative parthenocarpy results from SlAGAMOUS‐LIKE 6 loss of function

C Klap, E Yeshayahou, AM Bolger… - Plant Biotechnology …, 2017 - Wiley Online Library
The extreme sensitivity of the microsporogenesis process to moderately high or low
temperatures is a major hindrance for tomato (Solanum lycopersicum) sexual reproduction …

Genome sequencing reveals agronomically important loci in rice using MutMap

A Abe, S Kosugi, K Yoshida, S Natsume, H Takagi… - Nature …, 2012 - nature.com
The majority of agronomic traits are controlled by multiple genes that cause minor
phenotypic effects, making the identification of these genes difficult. Here we introduce …

Natural variations and genome-wide association studies in crop plants

X Huang, B Han - Annual review of plant biology, 2014 - annualreviews.org
Natural variants of crops are generated from wild progenitor plants under both natural and
human selection. Diverse crops that are able to adapt to various environmental conditions …