Metabolomics in systems biology
W Weckwerth - Annual review of plant biology, 2003 - annualreviews.org
The primary aim of “omic” technologies is the nontargeted identification of all gene products
(transcripts, proteins, and metabolites) present in a specific biological sample. By their …
(transcripts, proteins, and metabolites) present in a specific biological sample. By their …
Computational and statistical analysis of metabolomics data
Metabolomics is the comprehensive study of small molecule metabolites in biological
systems. By assaying and analyzing thousands of metabolites in biological samples, it …
systems. By assaying and analyzing thousands of metabolites in biological samples, it …
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
RU Ibarra, JS Edwards, BO Palsson - Nature, 2002 - nature.com
Annotated genome sequences, can be used to reconstruct whole-cell metabolic networks,,,.
These metabolic networks can be modelled and analysed (computed) to study complex …
These metabolic networks can be modelled and analysed (computed) to study complex …
Engineering secondary metabolite production in plants
R Verpoorte, J Memelink - Current opinion in biotechnology, 2002 - Elsevier
Recent achievements have been made in the metabolic engineering of plant secondary
metabolism. Various pathways have been altered using genes encoding biosynthetic …
metabolism. Various pathways have been altered using genes encoding biosynthetic …
Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography–mass …
B Luo, K Groenke, R Takors, C Wandrey… - … of chromatography A, 2007 - Elsevier
A highly selective and sensitive method for identification and quantification of intracellular
metabolites involved in central carbon metabolism (including glycolysis, pentose phosphate …
metabolites involved in central carbon metabolism (including glycolysis, pentose phosphate …
Metabolic pathway engineering for enhanced biohydrogen production
J Mathews, G Wang - International journal of hydrogen energy, 2009 - Elsevier
Hydrogen is an ideal, clean, and potentially sustainable energy carrier for the future due to
its abundance and non-polluting nature. Numerous bacteria, cyanobacteria, and algae are …
its abundance and non-polluting nature. Numerous bacteria, cyanobacteria, and algae are …
Developing Aspergillus as a host for heterologous expression
D Lubertozzi, JD Keasling - Biotechnology advances, 2009 - Elsevier
Filamentous fungi have long been used for production of a range of valuable products; with
the advent of molecular biology, it became apparent that these fungi possess considerable …
the advent of molecular biology, it became apparent that these fungi possess considerable …
Systems biotechnology for strain improvement
Various high-throughput experimental techniques are routinely used for generating large
amounts of omics data. In parallel, in silico modelling and simulation approaches are being …
amounts of omics data. In parallel, in silico modelling and simulation approaches are being …
Minimal cut sets in biochemical reaction networks
S Klamt, ED Gilles - Bioinformatics, 2004 - academic.oup.com
Motivation: Structural studies of metabolic networks yield deeper insight into topology,
functionality and capabilities of the metabolisms of different organisms. Here, we address …
functionality and capabilities of the metabolisms of different organisms. Here, we address …
Rapid determination of reaction kinetics with an automated microfluidic system
JP McMullen, KF Jensen - Organic Process Research & …, 2011 - ACS Publications
Kinetic information is used to determine the optimal reaction conditions, to successfully scale
up a reaction from the laboratory to the pilot plant, and to improve process control. Obtaining …
up a reaction from the laboratory to the pilot plant, and to improve process control. Obtaining …