Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
Gene expression occurs in two essential steps: transcription and translation. In bacteria, the
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …

Repression of transcription initiation in bacteria

F Rojo - Journal of bacteriology, 1999 - Am Soc Microbiol
Bacteria live in habitats of frequently changing conditions and have evolved very
sophisticated responses to adapt to environmental changes. These responses most …

Structural basis for transcription inhibition by E. coli SspA

F Wang, J Shi, D He, B Tong, C Zhang… - Nucleic Acids …, 2020 - academic.oup.com
Stringent starvation protein A (SspA) is an RNA polymerase (RNAP)-associated protein
involved in nucleotide metabolism, acid tolerance and virulence of bacteria. Despite …

Cooperativity between KorB and TrbA repressors of broad-host-range plasmid RK2

M Zatyka, L Bingle, AC Jones… - Journal of Bacteriology, 2001 - Am Soc Microbiol
ABSTRACT The KorB and TrbA proteins of broad-host-range plasmid RK2 are key
regulators of the plasmid genes required for conjugative transfer. trbBp is the primary …

Solution Structure of the K50 Class Homeodomain PITX2 Bound to DNA and Implications for Mutations That Cause Rieger Syndrome,

BA Chaney, K Clark-Baldwin, V Dave, J Ma… - Biochemistry, 2005 - ACS Publications
We have determined the solution structure of a complex containing the K50 class
homeodomain Pituitary homeobox protein 2 (PITX2) bound to its consensus DNA site …

[HTML][HTML] MarA-mediated transcriptional repression of the rob promoter

T Schneiders, SB Levy - Journal of biological chemistry, 2006 - ASBMB
The Escherichia coli transcriptional regulator MarA affects functions that include antibiotic
resistance, persistence, and survival. MarA functions as an activator or repressor of …

An inactive open complex mediated by an UP element at Escherichia coli promoters

H Tagami, H Aiba - Proceedings of the National Academy of …, 1999 - National Acad Sciences
A specific interaction between the α subunit of RNA polymerase and an A+ T-rich upstream
sequence (UP element) stimulates transcription at some promoters in Escherichia coli. We …

Reconstitution of Acetosyringone-Mediated Agrobacterium tumefaciens Virulence Gene Expression in the Heterologous Host Escherichia coli

SM Lohrke, H Yang, S Jin - Journal of Bacteriology, 2001 - Am Soc Microbiol
The ability to utilize Escherichia coli as a heterologous system in which to study the
regulation of Agrobacterium tumefaciens virulence genes and the mechanism of transfer …

Functional interactions between a phage histone-like protein and a transcriptional factor in regulation of φ29 early–late transcriptional switch

M Elías-Arnanz, M Salas - Genes & development, 1999 - genesdev.cshlp.org
Protein p6 is a nonspecific DNA-binding protein occurring in high abundance in phage φ29-
infected cells. Here, we demonstrate a novel role for this versatile histone-like protein: its …

[HTML][HTML] Mechanism for the switch of φ29 DNA early to late transcription by regulatory protein p4 and histone‐like protein p6

A Camacho, M Salas - The EMBO Journal, 2001 - embopress.org
Bacteriophage φ29 gene expression takes place from four major promoters, three of them
(A2b, A2c and A3) clustered within 219 bp at a central region of the genome. Transcription …