doubletrouble: an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

F Almeida-Silva, Y Van de Peer - bioRxiv, 2024 - biorxiv.org
Gene and genome duplications are major evolutionary forces that shape the diversity and
complexity of life. However, different duplication modes have distinct impacts on gene …

Multiomic analysis of genes related to oil traits in legumes provide insights into lipid metabolism and oil richness in soybean

DK Turquetti-Moraes, CB Cardoso-Silva… - bioRxiv, 2024 - biorxiv.org
Soybean (Glycine max) and common bean (Phaseolus vulgaris) diverged approximately 19
million years ago. While these species share a whole-genome duplication (WGD), the …

[HTML][HTML] How can we improve upon and expand the scope of our phylogenomic inferences?

P Avasthi, ML Hochstrasser, J Neal, AH Patton… - 2024 - research.arcadiascience.com
Purpose We recently released NovelTree—a modular Nextflow workflow that takes
proteomes from diverse organisms as input and conducts phylogenetic inference for …