Dynamic alternative DNA structures in biology and disease

G Wang, KM Vasquez - Nature Reviews Genetics, 2023 - nature.com
Repetitive elements in the human genome, once considered 'junk DNA', are now known to
adopt more than a dozen alternative (that is, non-B) DNA structures, such as self-annealed …

Tandem repeats mediating genetic plasticity in health and disease

AJ Hannan - Nature Reviews Genetics, 2018 - nature.com
Accumulating evidence suggests that many classes of DNA repeats exhibit attributes that
distinguish them from other genetic variants, including the fact that they are more liable to …

The impact of short tandem repeat variation on gene expression

SF Fotsing, J Margoliash, C Wang, S Saini, R Yanicky… - Nature …, 2019 - nature.com
Short tandem repeats (STRs) have been implicated in a variety of complex traits in humans.
However, genome-wide studies of the effects of STRs on gene expression thus far have had …

Abundant contribution of short tandem repeats to gene expression variation in humans

M Gymrek, T Willems, A Guilmatre, H Zeng, B Markus… - Nature …, 2016 - nature.com
The contribution of repetitive elements to quantitative human traits is largely unknown. Here
we report a genome-wide survey of the contribution of short tandem repeats (STRs), which …

Modulation of cellular function by polyamines

K Igarashi, K Kashiwagi - The international journal of biochemistry & cell …, 2010 - Elsevier
Polyamines (putrescine, spermidine and spermine) are essential for normal cell growth. The
polyamine levels in cells are regulated by biosynthesis, degradation, and transport …

Variable tandem repeats accelerate evolution of coding and regulatory sequences

R Gemayel, MD Vinces, M Legendre… - Annual review of …, 2010 - annualreviews.org
Genotype-to-phenotype mapping commonly focuses on two major classes of mutations:
single nucleotide polymorphisms (SNPs) and copy number variation (CNV). Here, we …

The evolution of transcriptional regulation in eukaryotes

GA Wray, MW Hahn, E Abouheif… - Molecular biology …, 2003 - academic.oup.com
Gene expression is central to the genotype-phenotype relationship in all organisms, and it is
an important component of the genetic basis for evolutionary change in diverse aspects of …

Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects

DX Zhang, GM Hewitt - Molecular ecology, 2003 - Wiley Online Library
Population‐genetic studies have been remarkably productive and successful in the last
decade following the invention of PCR technology and the introduction of mitochondrial and …

The functional role of polyamines in eukaryotic cells

K Igarashi, K Kashiwagi - The international journal of biochemistry & cell …, 2019 - Elsevier
Polyamines, consisting of putrescine, spermidine and spermine are essential for normal cell
growth and viability in eukaryotic cells. Since polyamines are cations, they interact with DNA …

Why repetitive DNA is essential to genome function

JA Shapiro, R von Sternberg - Biological Reviews, 2005 - cambridge.org
There are clear theoretical reasons and many well-documented examples which show that
repetitive DNA is essential for genome function. Generic repeated signals in the DNA are …