Methods used for the study of endophytic fungi: A review on methodologies and challenges, and associated tips
JBA Dos Reis, AS Lorenzi, HMM do Vale - Archives of Microbiology, 2022 - Springer
Endophytic fungi are microorganisms that colonize the interior of plant tissues (eg leaves,
seeds, stem, trunk, roots, fruits, flowers) in intracellular and/or extracellular spaces without …
seeds, stem, trunk, roots, fruits, flowers) in intracellular and/or extracellular spaces without …
Intragenomic rDNA variation-the product of concerted evolution, mutation, or something in between?
The classical model of concerted evolution states that hundreds to thousands of ribosomal
DNA (rDNA) units undergo homogenization, making the multiple copies of the individual …
DNA (rDNA) units undergo homogenization, making the multiple copies of the individual …
Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species
Cytoplasmic chloroplast (cp) genomes and nuclear ribosomal DNA (nR) are the primary
sequences used to understand plant diversity and evolution. We introduce a high …
sequences used to understand plant diversity and evolution. We introduce a high …
Cytogenetic features of rRNA genes across land plants: analysis of the Plant rDNA database
The online resource http://www. plantrdnadatabase. com/stores information on the number,
chromosomal locations and structure of the 5S and 18S‐5.8 S‐26S (35S) ribosomal DNA s …
chromosomal locations and structure of the 5S and 18S‐5.8 S‐26S (35S) ribosomal DNA s …
Capturing single‐copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in …
With the decreasing cost and availability of many newly developed bioinformatics pipelines,
next‐generation sequencing (NGS) has revolutionized plant systematics in recent years …
next‐generation sequencing (NGS) has revolutionized plant systematics in recent years …
Strategies for molecular authentication of herbal products: from experimental design to data analysis
HY Wu, PC Shaw - Chinese Medicine, 2022 - Springer
Molecular herbal authentication has gained worldwide popularity in the past decade. DNA-
based methods, including DNA barcoding and species-specific amplification, have been …
based methods, including DNA barcoding and species-specific amplification, have been …
Multi‐locus phylogenetics, lineage sorting, and reticulation in Pinus subsection Australes
DS Gernandt, X Aguirre Dugua… - American Journal of …, 2018 - Wiley Online Library
Premise of the Study Both incomplete lineage sorting and reticulation have been proposed
as causes of phylogenetic incongruence. Disentangling these factors may be most difficult in …
as causes of phylogenetic incongruence. Disentangling these factors may be most difficult in …
Phylogenetic analysis and development of molecular markers for five medicinal Alpinia species based on complete plastome sequences
H Yang, L Wang, H Chen, M Jiang, W Wu, S Liu… - BMC plant biology, 2021 - Springer
Background Alpinia species are widely used as medicinal herbs. To understand the
taxonomic classification and plastome evolution of the medicinal Alpinia species and …
taxonomic classification and plastome evolution of the medicinal Alpinia species and …
Allele sorting as a novel approach to resolving the origin of allotetraploids using Hyb-Seq data: a case study of the Balkan mountain endemic Cardamine …
Mountains of the Balkan Peninsula are significant biodiversity hotspots with great species
richness and a large proportion of narrow endemics. Processes that have driven the …
richness and a large proportion of narrow endemics. Processes that have driven the …
Nightmare or delight: Taxonomic circumscription meets reticulate evolution in the phylogenomic era
ZT Jin, RGJ Hodel, DK Ma, H Wang, GN Liu… - Molecular Phylogenetics …, 2023 - Elsevier
Phylogenetic studies in the phylogenomics era have demonstrated that reticulate evolution
greatly impedes the accuracy of phylogenetic inference, and consequently can obscure …
greatly impedes the accuracy of phylogenetic inference, and consequently can obscure …