A comprehensive review of image analysis methods for microorganism counting: from classical image processing to deep learning approaches

J Zhang, C Li, MM Rahaman, Y Yao, P Ma… - Artificial Intelligence …, 2022 - Springer
Microorganisms such as bacteria and fungi play essential roles in many application fields,
like biotechnique, medical technique and industrial domain. Microorganism counting …

OpenCFU, a new free and open-source software to count cell colonies and other circular objects

Q Geissmann - PloS one, 2013 - journals.plos.org
Counting circular objects such as cell colonies is an important source of information for
biologists. Although this task is often time-consuming and subjective, it is still predominantly …

Bacterial colony counting with convolutional neural networks in digital microbiology imaging

A Ferrari, S Lombardi, A Signoroni - Pattern Recognition, 2017 - Elsevier
Counting bacterial colonies on microbiological culture plates is a time-consuming, error-
prone, nevertheless essential quantitative task in Clinical Microbiology Laboratories. With …

A review on methods for automatic counting of objects in digital images

JGA Barbedo - IEEE Latin America Transactions, 2012 - ieeexplore.ieee.org
A growing number of routine and research activities, in a wide variety of fields, have the
counting of certain types of objects (cells, people, insects, etc.) as one of their main …

Image generation by GAN and style transfer for agar plate image segmentation

P Andreini, S Bonechi, M Bianchini, A Mecocci… - Computer methods and …, 2020 - Elsevier
Background and objectives. Deep learning models and specifically Convolutional Neural
Networks (CNNs) are becoming the leading approach in many computer vision tasks …

Counting colonies of clonogenic assays by using densitometric software

M Niyazi, I Niyazi, C Belka - Radiation oncology, 2007 - Springer
Clonogenic assays are a useful tool to test whether a given cancer therapy can reduce the
clonogenic survival of tumour cells. A colony is defined as a cluster of at least 50 cells which …

Automated counting of bacterial colonies by image analysis

PJ Chiang, MJ Tseng, ZS He, CH Li - Journal of microbiological methods, 2015 - Elsevier
Research on microorganisms often involves culturing as a means to determine the survival
and proliferation of bacteria. The number of colonies in a culture is counted to calculate the …

Effective object recognition for automated counting of colonies in Petri dishes (automated colony counting)

J Marotz, C Lübbert, W Eisenbeiss - Computer methods and programs in …, 2001 - Elsevier
Determination of the number of colonies (colony forming units, CFU) is a standard method in
microbiological analysis to ensure the quality of drinking water. Normally this tedious work is …

Real-time bacterial microcolony counting using on-chip microscopy

JH Jung, JE Lee - Scientific reports, 2016 - nature.com
Observing microbial colonies is the standard method for determining the microbe titer and
investigating the behaviors of microbes. Here, we report an automated, real-time bacterial …

COVASIAM: an image analysis method that allows detection of confluent microbial colonies and colonies of various sizes for automated counting

G Corkidi, R Diaz-Uribe, JL Folch-Mallol… - Applied and …, 1998 - Am Soc Microbiol
In this work we introduce the confluent and various sizes image analysis method
(COVASIAM), an automated colony count technique that uses digital imaging technology for …