A comprehensive review of image analysis methods for microorganism counting: from classical image processing to deep learning approaches
Microorganisms such as bacteria and fungi play essential roles in many application fields,
like biotechnique, medical technique and industrial domain. Microorganism counting …
like biotechnique, medical technique and industrial domain. Microorganism counting …
OpenCFU, a new free and open-source software to count cell colonies and other circular objects
Q Geissmann - PloS one, 2013 - journals.plos.org
Counting circular objects such as cell colonies is an important source of information for
biologists. Although this task is often time-consuming and subjective, it is still predominantly …
biologists. Although this task is often time-consuming and subjective, it is still predominantly …
Bacterial colony counting with convolutional neural networks in digital microbiology imaging
A Ferrari, S Lombardi, A Signoroni - Pattern Recognition, 2017 - Elsevier
Counting bacterial colonies on microbiological culture plates is a time-consuming, error-
prone, nevertheless essential quantitative task in Clinical Microbiology Laboratories. With …
prone, nevertheless essential quantitative task in Clinical Microbiology Laboratories. With …
A review on methods for automatic counting of objects in digital images
JGA Barbedo - IEEE Latin America Transactions, 2012 - ieeexplore.ieee.org
A growing number of routine and research activities, in a wide variety of fields, have the
counting of certain types of objects (cells, people, insects, etc.) as one of their main …
counting of certain types of objects (cells, people, insects, etc.) as one of their main …
Image generation by GAN and style transfer for agar plate image segmentation
Background and objectives. Deep learning models and specifically Convolutional Neural
Networks (CNNs) are becoming the leading approach in many computer vision tasks …
Networks (CNNs) are becoming the leading approach in many computer vision tasks …
Counting colonies of clonogenic assays by using densitometric software
M Niyazi, I Niyazi, C Belka - Radiation oncology, 2007 - Springer
Clonogenic assays are a useful tool to test whether a given cancer therapy can reduce the
clonogenic survival of tumour cells. A colony is defined as a cluster of at least 50 cells which …
clonogenic survival of tumour cells. A colony is defined as a cluster of at least 50 cells which …
Automated counting of bacterial colonies by image analysis
PJ Chiang, MJ Tseng, ZS He, CH Li - Journal of microbiological methods, 2015 - Elsevier
Research on microorganisms often involves culturing as a means to determine the survival
and proliferation of bacteria. The number of colonies in a culture is counted to calculate the …
and proliferation of bacteria. The number of colonies in a culture is counted to calculate the …
Effective object recognition for automated counting of colonies in Petri dishes (automated colony counting)
J Marotz, C Lübbert, W Eisenbeiss - Computer methods and programs in …, 2001 - Elsevier
Determination of the number of colonies (colony forming units, CFU) is a standard method in
microbiological analysis to ensure the quality of drinking water. Normally this tedious work is …
microbiological analysis to ensure the quality of drinking water. Normally this tedious work is …
Real-time bacterial microcolony counting using on-chip microscopy
JH Jung, JE Lee - Scientific reports, 2016 - nature.com
Observing microbial colonies is the standard method for determining the microbe titer and
investigating the behaviors of microbes. Here, we report an automated, real-time bacterial …
investigating the behaviors of microbes. Here, we report an automated, real-time bacterial …
COVASIAM: an image analysis method that allows detection of confluent microbial colonies and colonies of various sizes for automated counting
G Corkidi, R Diaz-Uribe, JL Folch-Mallol… - Applied and …, 1998 - Am Soc Microbiol
In this work we introduce the confluent and various sizes image analysis method
(COVASIAM), an automated colony count technique that uses digital imaging technology for …
(COVASIAM), an automated colony count technique that uses digital imaging technology for …