Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors

JC Zinder, CD Lima - Genes & development, 2017 - genesdev.cshlp.org
The eukaryotic RNA exosome is an essential and conserved protein complex that can
degrade or process RNA substrates in the 3′-to-5′ direction. Since its discovery nearly …

Ribosomal stalling during translation: providing substrates for ribosome-associated protein quality control

CAP Joazeiro - Annual review of cell and developmental biology, 2017 - annualreviews.org
Cells of all organisms survey problems during translation elongation, which may happen as
a consequence of mRNA aberrations, inefficient decoding, or other sources. In eukaryotes …

[HTML][HTML] Quantitative proteomics of the cancer cell line encyclopedia

DP Nusinow, J Szpyt, M Ghandi, CM Rose… - Cell, 2020 - cell.com
Proteins are essential agents of biological processes. To date, large-scale profiling of cell
line collections including the Cancer Cell Line Encyclopedia (CCLE) has focused primarily …

Collided ribosomes form a unique structural interface to induce Hel2‐driven quality control pathways

K Ikeuchi, P Tesina, Y Matsuo, T Sugiyama… - The EMBO …, 2019 - embopress.org
Ribosome stalling triggers quality control pathways targeting the mRNA (NGD: no‐go decay)
and the nascent polypeptide (RQC: ribosome‐associated quality control). RQC requires …

Structure of Gcn1 bound to stalled and colliding 80S ribosomes

AA Pochopien, B Beckert… - Proceedings of the …, 2021 - National Acad Sciences
The Gcn pathway is conserved in all eukaryotes, including mammals such as humans,
where it is a crucial part of the integrated stress response (ISR). Gcn1 serves as an essential …

[HTML][HTML] Ribosome collisions trigger cis-acting feedback inhibition of translation initiation

S Juszkiewicz, G Slodkowicz, Z Lin, P Freire-Pritchett… - Elife, 2020 - elifesciences.org
Translation of aberrant mRNAs can cause ribosomes to stall, leading to collisions with
trailing ribosomes. Collided ribosomes are specifically recognised by ZNF598 to initiate …

[HTML][HTML] Mechanisms of readthrough mitigation reveal principles of GCN1-mediated translational quality control

MBD Müller, P Kasturi, GG Jayaraj, FU Hartl - Cell, 2023 - cell.com
Readthrough into the 3′ untranslated region (3′ UTR) of the mRNA results in the
production of aberrant proteins. Metazoans efficiently clear readthrough proteins, but the …

Molecular mechanism of translational stalling by inhibitory codon combinations and poly (A) tracts

P Tesina, LN Lessen, R Buschauer, J Cheng… - The EMBO …, 2020 - embopress.org
Inhibitory codon pairs and poly (A) tracts within the translated mRNA cause ribosome
stalling and reduce protein output. The molecular mechanisms that drive these stalling …

[HTML][HTML] Structural basis for clearing of ribosome collisions by the RQT complex

K Best, K Ikeuchi, L Kater, D Best, J Musial… - Nature …, 2023 - nature.com
Translation of aberrant messenger RNAs can cause stalling of ribosomes resulting in
ribosomal collisions. Collided ribosomes are specifically recognized to initiate stress …

Structural and molecular mechanisms for the control of eukaryotic 5′–3′ mRNA decay

JS Mugridge, J Coller, JD Gross - Nature structural & molecular biology, 2018 - nature.com
3′ RNA decay pathways are critical for quality control and regulation of gene expression.
Structural and biochemical studies have provided insights into the key nucleases that carry …