Synthetic biology tools to engineer microbial communities for biotechnology
NS McCarty, R Ledesma-Amaro - Trends in biotechnology, 2019 - cell.com
Microbial consortia have been used in biotechnology processes, including fermentation,
waste treatment, and agriculture, for millennia. Today, synthetic biologists are increasingly …
waste treatment, and agriculture, for millennia. Today, synthetic biologists are increasingly …
[HTML][HTML] Network analysis methods for studying microbial communities: A mini review
MS Matchado, M Lauber, S Reitmeier… - Computational and …, 2021 - Elsevier
Microorganisms including bacteria, fungi, viruses, protists and archaea live as communities
in complex and contiguous environments. They engage in numerous inter-and intra …
in complex and contiguous environments. They engage in numerous inter-and intra …
Co‐occurrence is not evidence of ecological interactions
There is a rich amount of information in co‐occurrence (presence–absence) data that could
be used to understand community assembly. This proposition first envisioned by Forbes …
be used to understand community assembly. This proposition first envisioned by Forbes …
Microbiome multi-omics network analysis: statistical considerations, limitations, and opportunities
The advent of large-scale microbiome studies affords newfound analytical opportunities to
understand how these communities of microbes operate and relate to their environment …
understand how these communities of microbes operate and relate to their environment …
'NetShift': a methodology for understanding 'driver microbes' from healthy and disease microbiome datasets
BK Kuntal, P Chandrakar, S Sadhu… - The ISME journal, 2019 - academic.oup.com
The combined effect of mutual association within the co-inhabiting microbes in human body
is known to play a major role in determining health status of individuals. The differential …
is known to play a major role in determining health status of individuals. The differential …
Endophytic bacterial communities associated with roots and leaves of plants growing in Chilean extreme environments
Several studies have demonstrated the relevance of endophytic bacteria on the growth and
fitness of agriculturally-relevant plants. To our knowledge, however, little information is …
fitness of agriculturally-relevant plants. To our knowledge, however, little information is …
Current methods, common practices, and perspectives in tracking and monitoring bioinoculants in soil
A Manfredini, E Malusà, C Costa, F Pallottino… - Frontiers in …, 2021 - frontiersin.org
Microorganisms promised to lead the bio-based revolution for a more sustainable
agriculture. Beneficial microorganisms could be a valid alternative to the use of chemical …
agriculture. Beneficial microorganisms could be a valid alternative to the use of chemical …
Fungal endophytic community and diversity associated with desert shrubs driven by plant identity and organ differentiation in extremely arid desert ecosystem
Y Zuo, X Li, J Yang, J Liu, L Zhao, X He - Journal of Fungi, 2021 - mdpi.com
Despite desert ecosystem being crucial to our understanding of natural geography, species
evolution and global climate change, there is limited information on the dynamics of their …
evolution and global climate change, there is limited information on the dynamics of their …
Metagenomics insights into the microbial diversity and microbiome network analysis on the heterogeneity of influent to effluent water
B Azli, MN Razak, AR Omar, NA Mohd Zain… - Frontiers in …, 2022 - frontiersin.org
Sanitizing the water sources of local communities is important to control the spread of
microbial resistance genes, especially those for water-borne illnesses. The activities of …
microbial resistance genes, especially those for water-borne illnesses. The activities of …
Structure and co-occurrence patterns of bacterial communities associated with white faeces disease outbreaks in Pacific white-leg shrimp Penaeus vannamei …
YR Alfiansah, S Peters, J Harder, C Hassenrück… - Scientific reports, 2020 - nature.com
Bacterial diseases cause production failures in shrimp aquacultures. To understand
environmental conditions and bacterial community dynamics contributing to white faeces …
environmental conditions and bacterial community dynamics contributing to white faeces …