A novel synthesis of two decades of microsatellite studies on European beech reveals decreasing genetic diversity from glacial refugia

C Stefanini, K Csilléry, B Ulaszewski, J Burczyk… - Tree Genetics & …, 2023 - Springer
Genetic diversity influences the evolutionary potential of forest trees under changing
environmental conditions, thus indirectly the ecosystem services that forests provide …

Organellar DNA continues to provide a rich source of information in the genomics era

C Blair - 2023 - Wiley Online Library
The genomics revolution continues to change how ecologists and evolutionary biologists
study the evolution and maintenance of biodiversity. It is now easier than ever to generate …

Effective double‐digest RAD sequencing and genotyping despite large genome size

R Gargiulo, T Kull, MF Fay - Molecular Ecology Resources, 2021 - Wiley Online Library
Obtaining informative data is the ambition of any genomic project, but in nonmodel species
with very large genomes, pursuing such a goal requires surmounting a series of analytical …

[HTML][HTML] Chloroplast Genome Variation and Phylogenetic Relationships of Autochthonous Varieties of Vitis vinifera from the Don Valley

FS Sharko, KO Petrova, MV Patrushev… - International Journal of …, 2024 - mdpi.com
The autochthonous grape varieties of the Don Valley, situated in southern Russia, constitute
a distinctive element of regional cultural heritage. These varieties have been adapted over …

Comparative Analysis of Chloroplast Genome of Meconopsis (Papaveraceae) Provides Insights into Their Genomic Evolution and Adaptation to High Elevation

S Zhao, X Gao, X Yu, T Yuan, G Zhang, C Liu… - International Journal of …, 2024 - mdpi.com
The Meconopsis species are widely distributed in the Qinghai-Tibet Plateau, Himalayas, and
Hengduan Mountains in China, and have high medicinal and ornamental value. The high …

Whole-genome resequencing identified QTLs, candidate genes and Kompetitive Allele-Specific PCR markers associated with the large fruit of Atlantic Giant …

L Pan, M Wang, Y Yang, C Chen, H Dai… - Frontiers in Plant …, 2022 - frontiersin.org
Atlantic Giant (AG) pumpkin (Cucurbita maxima) produces the world's largest fruit.
Elucidating the molecular mechanism of AG fruit formation is of scientific and practical …

Comparative Analysis of SNP Discovery and Genotyping in Fagus sylvatica L. and Quercus robur L. Using RADseq, GBS, and ddRAD Methods

B Ulaszewski, J Meger, J Burczyk - Forests, 2021 - mdpi.com
Next-generation sequencing of reduced representation genomic libraries (RRL) is capable
of providing large numbers of genetic markers for population genetic studies at relatively low …

The RadOrgMiner pipeline: Automated genotyping of organellar loci from RADseq data

L Laczkó, S Jordán, G Sramkó - Methods in Ecology and …, 2022 - Wiley Online Library
Different versions of Restriction‐site‐Associated DNA sequencing (RADseq) have become
powerful and popular tools in molecular ecology. Although RADseq datasets are generally …

First genome-wide data from Italian European beech (Fagus sylvatica L.): Strong and ancient differentiation between Alps and Apennines

A Marchesini, A Silverj, S Torre, O Rota-Stabelli… - PloS one, 2023 - journals.plos.org
The European beech (Fagus sylvatica L.) is one of the most widespread forest trees in
Europe whose distribution and intraspecific diversity has been largely shaped by repeated …

Comparison of ddRADseq and EUChip60K SNP genotyping systems for population genetics and genomic selection in Eucalyptus dunnii (Maiden)

NC Aguirre, PV Villalba, MN García, CV Filippi… - Frontiers in …, 2024 - frontiersin.org
Eucalyptus dunnii is one of the most important Eucalyptus species for short-fiber pulp
production in regions where other species of the genus are affected by poor soil and climatic …