Visualization of omics data for systems biology

N Gehlenborg, SI O'donoghue, NS Baliga… - Nature …, 2010 - nature.com
High-throughput studies of biological systems are rapidly accumulating a wealth of'omics'-
scale data. Visualization is a key aspect of both the analysis and understanding of these …

Analyzing and visualizing residue networks of protein structures

NT Doncheva, K Klein, FS Domingues… - Trends in biochemical …, 2011 - cell.com
The study of individual amino acid residues and their molecular interactions in protein
structures is crucial for understanding structure–function relationships. Recent work has …

UCSF ChimeraX: Structure visualization for researchers, educators, and developers

EF Pettersen, TD Goddard, CC Huang… - Protein …, 2021 - Wiley Online Library
UCSF ChimeraX is the next‐generation interactive visualization program from the Resource
for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX …

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

TD Goddard, CC Huang, EC Meng… - Protein …, 2018 - Wiley Online Library
UCSF ChimeraX is next‐generation software for the visualization and analysis of molecular
structures, density maps, 3D microscopy, and associated data. It addresses challenges in …

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

PW Rose, A Prlić, A Altunkaya, C Bi… - Nucleic acids …, 2016 - academic.oup.com
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB, http://rcsb. org), the US data center for the global PDB archive, makes PDB data freely …

NGL Viewer: a web application for molecular visualization

AS Rose, PW Hildebrand - Nucleic acids research, 2015 - academic.oup.com
Abstract The NGL Viewer (http://proteinformatics. charite. de/ngl) is a web application for the
visualization of macromolecular structures. By fully adopting capabilities of modern web …

Game on, science-how video game technology may help biologists tackle visualization challenges

Z Lv, A Tek, F Da Silva, C Empereur-Mot, M Chavent… - PloS one, 2013 - journals.plos.org
The video games industry develops ever more advanced technologies to improve rendering,
image quality, ergonomics and user experience of their creations providing very simple to …

PyMOL and Inkscape bridge the data and the data visualization

S Yuan, HCS Chan, S Filipek, H Vogel - Structure, 2016 - cell.com
Structural biology has come a long way, from being a niche interest of specialists to where
we are today, with over 127,500 biomolecular structures available in the Protein Data Bank …

[图书][B] Introduction to proteins: structure, function, and motion

A Kessel, N Ben-Tal - 2018 - taylorfrancis.com
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …

Drawing the PDB: protein− ligand complexes in two dimensions

K Stierand, M Rarey - ACS medicinal chemistry letters, 2010 - ACS Publications
The two-dimensional representation of molecules is a popular communication medium in
chemistry and the associated scientific fields. Computational methods for drawing small …