[HTML][HTML] Nanopore sequencing and its application to the study of microbial communities
L Ciuffreda, H Rodríguez-Pérez, C Flores - Computational and structural …, 2021 - Elsevier
Since its introduction, nanopore sequencing has enhanced our ability to study complex
microbial samples through the possibility to sequence long reads in real time using …
microbial samples through the possibility to sequence long reads in real time using …
[HTML][HTML] Towards the optimization of eDNA/eRNA sampling technologies for marine biosecurity surveillance
The field of eDNA is growing exponentially in response to the need for detecting rare and
invasive species for management and conservation decisions. Developing technologies and …
invasive species for management and conservation decisions. Developing technologies and …
[HTML][HTML] ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone
Background DNA barcodes are a useful tool for discovering, understanding, and monitoring
biodiversity which are critical tasks at a time of rapid biodiversity loss. However, widespread …
biodiversity which are critical tasks at a time of rapid biodiversity loss. However, widespread …
Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions
Third-generation long-read sequencing is transforming plant genomics. Oxford Nanopore
Technologies and Pacific Biosciences are offering competing long-read sequencing …
Technologies and Pacific Biosciences are offering competing long-read sequencing …
Genome-wide association study reveals genetic markers for antimicrobial resistance in Mycoplasma bovis
Mycoplasma bovis causes many health and welfare problems in cattle. Due to the absence
of clear insights regarding transmission dynamics and the lack of a registered vaccine in …
of clear insights regarding transmission dynamics and the lack of a registered vaccine in …
[HTML][HTML] Bovine respiratory disease: conventional to culture-independent approaches to studying antimicrobial resistance in North America
Numerous antimicrobial resistance (AMR) surveillance studies have been conducted in
North American feedlot cattle to investigate the major bacterial pathogens of the bovine …
North American feedlot cattle to investigate the major bacterial pathogens of the bovine …
[HTML][HTML] Virotyping and genetic antimicrobial susceptibility testing of porcine ETEC/STEC strains and associated plasmid types
N Vereecke, S Van Hoorde, D Sperling… - Frontiers in …, 2023 - frontiersin.org
Introduction Enterotoxigenic Escherichia coli (ETEC) infections are the most common cause
of secretory diarrhea in suckling and post-weaning piglets. For the latter, Shiga toxin …
of secretory diarrhea in suckling and post-weaning piglets. For the latter, Shiga toxin …
[HTML][HTML] Real-time on-site diagnosis of quarantine pathogens in plant tissues by nanopore-based sequencing
L Marcolungo, A Passera, S Maestri, E Segala… - Pathogens, 2022 - mdpi.com
Rapid and sensitive assays for the identification of plant pathogens are necessary for the
effective management of crop diseases. The main limitation of current diagnostic testing is …
effective management of crop diseases. The main limitation of current diagnostic testing is …
[HTML][HTML] Dynamics of subclinical pneumonia in male dairy calves in relation to antimicrobial therapy and production outcomes
S Jourquin, T Lowie, F Debruyne, L Chantillon… - Journal of Dairy …, 2023 - Elsevier
Quick thoracic ultrasonography (qTUS) is increasingly used as an on-farm method to
diagnose clinical and subclinical pneumonia in dairy calves. The primary objective of this …
diagnose clinical and subclinical pneumonia in dairy calves. The primary objective of this …
[HTML][HTML] A long-read sequencing approach for direct haplotype phasing in clinical settings
S Maestri, MG Maturo, E Cosentino… - International Journal of …, 2020 - mdpi.com
The reconstruction of individual haplotypes can facilitate the interpretation of disease risks;
however, high costs and technical challenges still hinder their assessment in clinical …
however, high costs and technical challenges still hinder their assessment in clinical …