[HTML][HTML] Nanopore sequencing and its application to the study of microbial communities

L Ciuffreda, H Rodríguez-Pérez, C Flores - Computational and structural …, 2021 - Elsevier
Since its introduction, nanopore sequencing has enhanced our ability to study complex
microbial samples through the possibility to sequence long reads in real time using …

[HTML][HTML] Towards the optimization of eDNA/eRNA sampling technologies for marine biosecurity surveillance

HA Bowers, X Pochon, U von Ammon, N Gemmell… - Water, 2021 - mdpi.com
The field of eDNA is growing exponentially in response to the need for detecting rare and
invasive species for management and conservation decisions. Developing technologies and …

[HTML][HTML] ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone

A Srivathsan, L Lee, K Katoh, E Hartop, SN Kutty… - BMC biology, 2021 - Springer
Background DNA barcodes are a useful tool for discovering, understanding, and monitoring
biodiversity which are critical tasks at a time of rapid biodiversity loss. However, widespread …

Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions

B Pucker, I Irisarri, J de Vries, B Xu - Quantitative Plant Biology, 2022 - cambridge.org
Third-generation long-read sequencing is transforming plant genomics. Oxford Nanopore
Technologies and Pacific Biosciences are offering competing long-read sequencing …

Genome-wide association study reveals genetic markers for antimicrobial resistance in Mycoplasma bovis

J Bokma, N Vereecke, H Nauwynck… - Microbiology …, 2021 - Am Soc Microbiol
Mycoplasma bovis causes many health and welfare problems in cattle. Due to the absence
of clear insights regarding transmission dynamics and the lack of a registered vaccine in …

[HTML][HTML] Bovine respiratory disease: conventional to culture-independent approaches to studying antimicrobial resistance in North America

S Andrés-Lasheras, M Jelinski, R Zaheer, TA McAllister - Antibiotics, 2022 - mdpi.com
Numerous antimicrobial resistance (AMR) surveillance studies have been conducted in
North American feedlot cattle to investigate the major bacterial pathogens of the bovine …

[HTML][HTML] Virotyping and genetic antimicrobial susceptibility testing of porcine ETEC/STEC strains and associated plasmid types

N Vereecke, S Van Hoorde, D Sperling… - Frontiers in …, 2023 - frontiersin.org
Introduction Enterotoxigenic Escherichia coli (ETEC) infections are the most common cause
of secretory diarrhea in suckling and post-weaning piglets. For the latter, Shiga toxin …

[HTML][HTML] Real-time on-site diagnosis of quarantine pathogens in plant tissues by nanopore-based sequencing

L Marcolungo, A Passera, S Maestri, E Segala… - Pathogens, 2022 - mdpi.com
Rapid and sensitive assays for the identification of plant pathogens are necessary for the
effective management of crop diseases. The main limitation of current diagnostic testing is …

[HTML][HTML] Dynamics of subclinical pneumonia in male dairy calves in relation to antimicrobial therapy and production outcomes

S Jourquin, T Lowie, F Debruyne, L Chantillon… - Journal of Dairy …, 2023 - Elsevier
Quick thoracic ultrasonography (qTUS) is increasingly used as an on-farm method to
diagnose clinical and subclinical pneumonia in dairy calves. The primary objective of this …

[HTML][HTML] A long-read sequencing approach for direct haplotype phasing in clinical settings

S Maestri, MG Maturo, E Cosentino… - International Journal of …, 2020 - mdpi.com
The reconstruction of individual haplotypes can facilitate the interpretation of disease risks;
however, high costs and technical challenges still hinder their assessment in clinical …