Modulation of cellular processes by histone and non-histone protein acetylation

M Shvedunova, A Akhtar - Nature reviews Molecular cell biology, 2022 - nature.com
Lysine acetylation is a widespread and versatile protein post-translational modification.
Lysine acetyltransferases and lysine deacetylases catalyse the addition or removal …

Liquid–liquid phase separation in human health and diseases

B Wang, L Zhang, T Dai, Z Qin, H Lu, L Zhang… - … and Targeted Therapy, 2021 - nature.com
Emerging evidence suggests that liquid–liquid phase separation (LLPS) represents a vital
and ubiquitous phenomenon underlying the formation of membraneless organelles in …

Protein assembly by design

J Zhu, N Avakyan, A Kakkis, AM Hoffnagle… - Chemical …, 2021 - ACS Publications
Proteins are nature's primary building blocks for the construction of sophisticated molecular
machines and dynamic materials, ranging from protein complexes such as photosystem II …

Histone deacetylases (HDACs): evolution, specificity, role in transcriptional complexes, and pharmacological actionability

G Milazzo, D Mercatelli, G Di Muzio, L Triboli… - Genes, 2020 - mdpi.com
Histone deacetylases (HDACs) are evolutionary conserved enzymes which operate by
removing acetyl groups from histones and other protein regulatory factors, with functional …

Structural mechanism of cGAS inhibition by the nucleosome

GR Pathare, A Decout, S Glück, S Cavadini… - Nature, 2020 - nature.com
The DNA sensor cyclic GMP–AMP synthase (cGAS) initiates innate immune responses
following microbial infection, cellular stress and cancer. Upon activation by double-stranded …

The interaction landscape between transcription factors and the nucleosome

F Zhu, L Farnung, E Kaasinen, B Sahu, Y Yin, B Wei… - Nature, 2018 - nature.com
Nucleosomes cover most of the genome and are thought to be displaced by transcription
factors in regions that direct gene expression. However, the modes of interaction between …

Tracking chromatin state changes using nanoscale photo-proximity labelling

CP Seath, AJ Burton, X Sun, G Lee, RE Kleiner… - Nature, 2023 - nature.com
Interactions between biomolecules underlie all cellular processes and ultimately control cell
fate. Perturbation of native interactions through mutation, changes in expression levels or …

Mechanisms of OCT4-SOX2 motif readout on nucleosomes

AK Michael, RS Grand, L Isbel, S Cavadini, Z Kozicka… - Science, 2020 - science.org
Transcription factors (TFs) regulate gene expression through chromatin where nucleosomes
restrict DNA access. To study how TFs bind nucleosome-occupied motifs, we focused on the …

Biological embedding of experience: a primer on epigenetics

MJ Aristizabal, I Anreiter… - Proceedings of the …, 2020 - National Acad Sciences
Biological embedding occurs when life experience alters biological processes to affect later
life health and well-being. Although extensive correlative data exist supporting the notion …

Principles of nucleosome recognition by chromatin factors and enzymes

RK McGinty, S Tan - Current Opinion in Structural Biology, 2021 - Elsevier
The recent torrent of structures of chromatin complexes determined by cryoelectron
microscopy provides an opportunity to discern general principles for how chromatin factors …