Evolutionary ecology of the marine Roseobacter clade
Members of the Roseobacter clade are equipped with a tremendous diversity of metabolic
capabilities, which in part explains their success in so many different marine habitats. Ideas …
capabilities, which in part explains their success in so many different marine habitats. Ideas …
Forces that influence the evolution of codon bias
PM Sharp, LR Emery, K Zeng - … Transactions of the …, 2010 - royalsocietypublishing.org
The frequencies of alternative synonymous codons vary both among species and among
genes from the same genome. These patterns have been inferred to reflect the action of …
genes from the same genome. These patterns have been inferred to reflect the action of …
Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae …
Understanding of the phylogeny and interrelationships of the genera within the order
'Enterobacteriales' has proven difficult using the 16S rRNA gene and other single-gene or …
'Enterobacteriales' has proven difficult using the 16S rRNA gene and other single-gene or …
Phylogeny of gammaproteobacteria
KP Williams, JJ Gillespie, BWS Sobral… - Journal of …, 2010 - Am Soc Microbiol
The phylogeny of the large bacterial class Gammaproteobacteria has been difficult to
resolve. Here we apply a telescoping multiprotein approach to the problem for 104 diverse …
resolve. Here we apply a telescoping multiprotein approach to the problem for 104 diverse …
Origin of an alternative genetic code in the extremely small and GC–rich genome of a bacterial symbiont
The genetic code relates nucleotide sequence to amino acid sequence and is shared across
all organisms, with the rare exceptions of lineages in which one or a few codons have …
all organisms, with the rare exceptions of lineages in which one or a few codons have …
Phylogenomics
H Philippe, F Delsuc, H Brinkmann… - Annu. Rev. Ecol. Evol …, 2005 - annualreviews.org
▪ Abstract The continuous flow of genomic data is creating unprecedented opportunities for
the reconstruction of molecular phylogenies. Access to whole-genome data means that …
the reconstruction of molecular phylogenies. Access to whole-genome data means that …
Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes
The origin, evolution, and functional relevance of genomic variations in GC content are a
long-debated topic, especially in mammals. Most of the existing literature, however, has …
long-debated topic, especially in mammals. Most of the existing literature, however, has …
New methods for detecting lineage-specific selection
So far, most methods for identifying sequences under selection based on comparative
sequence data have either assumed selectional pressures are the same across all branches …
sequence data have either assumed selectional pressures are the same across all branches …
Arsenophonus, an emerging clade of intracellular symbionts with a broad host distribution
E Nováková, V Hypša, NA Moran - BMC microbiology, 2009 - Springer
Abstract Background The genus Arsenophonus is a group of symbiotic, mainly insect-
associated bacteria with rapidly increasing number of records. It is known from a broad …
associated bacteria with rapidly increasing number of records. It is known from a broad …
Reductive evolution of bacterial genome in insect gut environment
N Nikoh, T Hosokawa, K Oshima… - Genome biology and …, 2011 - academic.oup.com
Obligate endocellular symbiotic bacteria of insects and other organisms generally exhibit
drastic genome reduction. Recently, it was shown that symbiotic gut bacteria of some …
drastic genome reduction. Recently, it was shown that symbiotic gut bacteria of some …