Fungi as mediators linking organisms and ecosystems
M Bahram, T Netherway - FEMS Microbiology Reviews, 2022 - academic.oup.com
Fungi form a major and diverse component of most ecosystems on Earth. They are both
micro and macroorganisms with high and varying functional diversity as well as great …
micro and macroorganisms with high and varying functional diversity as well as great …
OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes
J Sun, F Lu, Y Luo, L Bie, L Xu, Y Wang - Nucleic acids research, 2023 - academic.oup.com
Advancements in comparative genomics research have led to a growing interest in studying
species evolution and genetic diversity. To facilitate this research, OrthoVenn3 has been …
species evolution and genetic diversity. To facilitate this research, OrthoVenn3 has been …
A genome-scale phylogeny of the kingdom Fungi
Phylogenomic studies using genome-scale amounts of data have greatly improved
understanding of the tree of life. Despite the diversity, ecological significance, and …
understanding of the tree of life. Despite the diversity, ecological significance, and …
Sequencing the genomes of the first terrestrial fungal lineages: what have we learned?
The first genome sequenced of a eukaryotic organism was for Saccharomyces cerevisiae,
as reported in 1996, but it was more than 10 years before any of the zygomycete fungi …
as reported in 1996, but it was more than 10 years before any of the zygomycete fungi …
Adaptive advantages of restorative RNA editing in fungi for resolving survival-reproduction trade-offs
Z Qi, P Lu, X Long, X Cao, M Wu, K Xin, T Xue… - Science …, 2024 - science.org
RNA editing in various organisms commonly restores RNA sequences to their ancestral
state, but its adaptive advantages are debated. In fungi, restorative editing corrects …
state, but its adaptive advantages are debated. In fungi, restorative editing corrects …
[HTML][HTML] EukProt: a database of genome-scale predicted proteins across the diversity of eukaryotes
DJ Richter, C Berney, JFH Strassert… - Peer Community …, 2022 - peercommunityjournal.org
EukProt is a database of published and publicly available predicted protein sets selected to
represent the breadth of eukaryotic diversity, currently including 993 species from all major …
represent the breadth of eukaryotic diversity, currently including 993 species from all major …
PaxDb 5.0: curated protein quantification data suggests adaptive proteome changes in yeasts
Abstract The" Protein Abundances Across Organisms" database (PaxDb) is an integrative
metaresource dedicated to protein abundance levels, in tissue-specific or whole-organism …
metaresource dedicated to protein abundance levels, in tissue-specific or whole-organism …
Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota
Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living
flagellated stages (zoospores) remain poorly known and their phylogenetic position is often …
flagellated stages (zoospores) remain poorly known and their phylogenetic position is often …
Genomes of fungi and relatives reveal delayed loss of ancestral gene families and evolution of key fungal traits
Fungi are ecologically important heterotrophs that have radiated into most niches on Earth
and fulfil key ecological services. Despite intense interest in their origins, major genomic …
and fulfil key ecological services. Despite intense interest in their origins, major genomic …
Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems
Soil fungi belonging to different functional guilds, such as saprotrophs, pathogens, and
mycorrhizal symbionts, play key roles in forest ecosystems. To date, no study has compared …
mycorrhizal symbionts, play key roles in forest ecosystems. To date, no study has compared …