Microbial surface colonization and biofilm development in marine environments

H Dang, CR Lovell - Microbiology and molecular biology reviews, 2016 - Am Soc Microbiol
Biotic and abiotic surfaces in marine waters are rapidly colonized by microorganisms.
Surface colonization and subsequent biofilm formation and development provide numerous …

Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities

BF Tan, C Ng, JP Nshimyimana, LL Loh… - Frontiers in …, 2015 - frontiersin.org
Water quality is an emergent property of a complex system comprised of interacting
microbial populations and introduced microbial and chemical contaminants. Studies …

Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes

F Ju, K Beck, X Yin, A Maccagnan… - The ISME …, 2019 - academic.oup.com
Wastewater treatment plants (WWTPs) are implicated as hotspots for the dissemination of
antibacterial resistance into the environment. However, the in situ processes governing …

An extensive reef system at the Amazon River mouth

RL Moura, GM Amado-Filho, FC Moraes… - Science …, 2016 - science.org
Large rivers create major gaps in reef distribution along tropical shelves. The Amazon River
represents 20% of the global riverine discharge to the ocean, generating up to a 1.3× 106 …

Metatranscriptome of human faecal microbial communities in a cohort of adult men

GS Abu-Ali, RS Mehta, J Lloyd-Price, H Mallick… - Nature …, 2018 - nature.com
The gut microbiome is intimately related to human health, but it is not yet known which
functional activities are driven by specific microorganisms' ecological configurations or …

Dispersing misconceptions and identifying opportunities for the use of'omics' in soil microbial ecology

JI Prosser - Nature Reviews Microbiology, 2015 - nature.com
Technological advances are enabling the sequencing of environmental DNA and RNA at
increasing depth and with decreasing costs. Metagenomic and transcriptomic analysis of …

Interactions between sunlight and microorganisms influence dissolved organic matter degradation along the aquatic continuum

RM Cory, GW Kling - Limnology and Oceanography Letters, 2018 - Wiley Online Library
CO2 emissions from inland surface waters to the atmosphere are almost as large as the net
carbon transfer from the atmosphere to Earth's land surface. This large flux is supported by …

Marine bacterial and archaeal ion-pumping rhodopsins: genetic diversity, physiology, and ecology

J Pinhassi, EF DeLong, O Béjà… - Microbiology and …, 2016 - Am Soc Microbiol
The recognition of a new family of rhodopsins in marine planktonic bacteria, proton-pumping
proteorhodopsin, expanded the known phylogenetic range, environmental distribution, and …

The global ocean microbiome

MA Moran - Science, 2015 - science.org
BACKGROUND Oceanographers began studying the ocean microbiome in earnest over
four decades ago, when it was recognized that microbes are responsible for nearly all of the …

Gene expression changes and community turnover differentially shape the global ocean metatranscriptome

G Salazar, L Paoli, A Alberti, J Huerta-Cepas… - Cell, 2019 - cell.com
Ocean microbial communities strongly influence the biogeochemistry, food webs, and
climate of our planet. Despite recent advances in understanding their taxonomic and …