Canadian Association of Radiologists white paper on artificial intelligence in radiology

A Tang, R Tam, A Cadrin-Chênevert… - Canadian …, 2018 - journals.sagepub.com
Artificial intelligence (AI) is rapidly moving from an experimental phase to an implementation
phase in many fields, including medicine. The combination of improved availability of large …

Challenges and opportunities in edge computing

B Varghese, N Wang, S Barbhuiya… - … conference on smart …, 2016 - ieeexplore.ieee.org
Many cloud-based applications employ a data centers as a central server to process data
that is generated by edge devices, such as smartphones, tablets and wearables. This model …

Cytoscape automation: empowering workflow-based network analysis

D Otasek, JH Morris, J Bouças, AR Pico, B Demchak - Genome biology, 2019 - Springer
Cytoscape is one of the most successful network biology analysis and visualization tools, but
because of its interactive nature, its role in creating reproducible, scalable, and novel …

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

E Afgan, D Baker, B Batut, M Van Den Beek… - Nucleic acids …, 2018 - academic.oup.com
Abstract Galaxy (homepage: https://galaxyproject. org, main public server: https://usegalaxy.
org) is a web-based scientific analysis platform used by tens of thousands of scientists …

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

E Afgan, D Baker, M Van den Beek… - Nucleic acids …, 2016 - academic.oup.com
High-throughput data production technologies, particularly 'next-generation'DNA
sequencing, have ushered in widespread and disruptive changes to biomedical research …

Pegasus, a workflow management system for science automation

E Deelman, K Vahi, G Juve, M Rynge… - Future Generation …, 2015 - Elsevier
Modern science often requires the execution of large-scale, multi-stage simulation and data
analysis pipelines to enable the study of complex systems. The amount of computation and …

ChEMBL web services: streamlining access to drug discovery data and utilities

M Davies, M Nowotka, G Papadatos… - Nucleic acids …, 2015 - academic.oup.com
ChEMBL is now a well-established resource in the fields of drug discovery and medicinal
chemistry research. The ChEMBL database curates and stores standardized bioactivity …

AiiDA: automated interactive infrastructure and database for computational science

G Pizzi, A Cepellotti, R Sabatini, N Marzari… - Computational Materials …, 2016 - Elsevier
Computational science has seen in the last decades a spectacular rise in the scope,
breadth, and depth of its efforts. Notwithstanding this prevalence and impact, it is often still …

A review of bioinformatic pipeline frameworks

J Leipzig - Briefings in bioinformatics, 2017 - academic.oup.com
High-throughput bioinformatic analyses increasingly rely on pipeline frameworks to process
sequence and metadata. Modern implementations of these frameworks differ on three key …

BioContainers: an open-source and community-driven framework for software standardization

F da Veiga Leprevost, BA Grüning, S Alves Aflitos… - …, 2017 - academic.oup.com
Motivation BioContainers (biocontainers. pro) is an open-source and community-driven
framework which provides platform independent executable environments for bioinformatics …