Archaea and the origin of eukaryotes

L Eme, A Spang, J Lombard, CW Stairs… - Nature Reviews …, 2017 - nature.com
Woese and Fox's 1977 paper on the discovery of the Archaea triggered a revolution in the
field of evolutionary biology by showing that life was divided into not only prokaryotes and …

Ubiquitin-like protein conjugation: structures, chemistry, and mechanism

L Cappadocia, CD Lima - Chemical reviews, 2018 - ACS Publications
Ubiquitin-like proteins (Ubl's) are conjugated to target proteins or lipids to regulate their
activity, stability, subcellular localization, or macromolecular interactions. Similar to ubiquitin …

An E1–E2 fusion protein primes antiviral immune signalling in bacteria

HE Ledvina, Q Ye, Y Gu, AE Sullivan, Y Quan, RK Lau… - Nature, 2023 - nature.com
In all organisms, innate immune pathways sense infection and rapidly activate potent
immune responses while avoiding inappropriate activation (autoimmunity). In humans, the …

RPL26/uL24 UFMylation is essential for ribosome-associated quality control at the endoplasmic reticulum

F Scavone, SC Gumbin… - Proceedings of the …, 2023 - National Acad Sciences
Ribosomes that stall while translating cytosolic proteins are incapacitated by incomplete
nascent chains, termed “arrest peptides”(APs) that are destroyed by the ubiquitin …

Gene family innovation, conservation and loss on the animal stem lineage

DJ Richter, P Fozouni, MB Eisen, N King - elife, 2018 - elifesciences.org
Choanoflagellates, the closest living relatives of animals, can provide unique insights into
the changes in gene content that preceded the origin of animals. However, only two …

A eukaryotic-like ubiquitination system in bacterial antiviral defence

LR Chambers, Q Ye, J Cai, M Gong, HE Ledvina… - Nature, 2024 - nature.com
Ubiquitination pathways have crucial roles in protein homeostasis, signalling and innate
immunity,–. In these pathways, an enzymatic cascade of E1, E2 and E3 proteins conjugates …

A phylogenetic and proteomic reconstruction of eukaryotic chromatin evolution

X Grau-Bové, C Navarrete, C Chiva… - Nature ecology & …, 2022 - nature.com
Histones and associated chromatin proteins have essential functions in eukaryotic genome
organization and regulation. Despite this fundamental role in eukaryotic cell biology, we lack …

Targeted protein degradation: from mechanisms to clinic

JM Tsai, RP Nowak, BL Ebert, ES Fischer - Nature Reviews Molecular …, 2024 - nature.com
Targeted protein degradation refers to the use of small molecules to induce the selective
degradation of proteins. In its most common form, this degradation is achieved through …

Shuffled ATG8 interacting motifs form an ancestral bridge between UFMylation and autophagy

L Picchianti, V Sánchez de Medina Hernández… - The EMBO …, 2023 - embopress.org
UFMylation involves the covalent modification of substrate proteins with UFM1 (Ubiquitin‐
fold modifier 1) and is important for maintaining ER homeostasis. Stalled translation triggers …

Dynamics of genomic innovation in the unicellular ancestry of animals

X Grau-Bove, G Torruella, S Donachie, H Suga… - Elife, 2017 - elifesciences.org
Which genomic innovations underpinned the origin of multicellular animals is still an open
debate. Here, we investigate this question by reconstructing the genome architecture and …