Life and death in the soil microbiome: how ecological processes influence biogeochemistry

NW Sokol, E Slessarev, GL Marschmann… - Nature Reviews …, 2022 - nature.com
Soil microorganisms shape global element cycles in life and death. Living soil
microorganisms are a major engine of terrestrial biogeochemistry, driving the turnover of soil …

Soil viral diversity, ecology and climate change

JK Jansson, R Wu - Nature Reviews Microbiology, 2023 - nature.com
Soil viruses are highly abundant and have important roles in the regulation of host dynamics
and soil ecology. Climate change is resulting in unprecedented changes to soil ecosystems …

Identification of mobile genetic elements with geNomad

AP Camargo, S Roux, F Schulz, M Babinski, Y Xu… - Nature …, 2023 - nature.com
Identifying and characterizing mobile genetic elements in sequencing data is essential for
understanding their diversity, ecology, biotechnological applications and impact on public …

Giant virus diversity and host interactions through global metagenomics

F Schulz, S Roux, D Paez-Espino, S Jungbluth… - Nature, 2020 - nature.com
Our current knowledge about nucleocytoplasmic large DNA viruses (NCLDVs) is largely
derived from viral isolates that are co-cultivated with protists and algae. Here we …

Giant virus biology and diversity in the era of genome-resolved metagenomics

F Schulz, C Abergel, T Woyke - Nature Reviews Microbiology, 2022 - nature.com
The discovery of giant viruses, with capsids as large as some bacteria, megabase-range
genomes and a variety of traits typically found only in cellular organisms, was one of the …

The landscape of genetic content in the gut and oral human microbiome

BT Tierney, Z Yang, JM Luber, M Beaudin… - Cell host & …, 2019 - cell.com
Despite substantial interest in the species diversity of the human microbiome and its role in
disease, the scale of its genetic diversity, which is fundamental to deciphering human …

Soil microbiomes under climate change and implications for carbon cycling

D Naylor, N Sadler, A Bhattacharjee… - Annual Review of …, 2020 - annualreviews.org
Communities of soil microorganisms (soil microbiomes) play a major role in biogeochemical
cycles and support of plant growth. Here we focus primarily on the roles that the soil …

Diversity in the soil virosphere: to infinity and beyond?

S Roux, JB Emerson - Trends in Microbiology, 2022 - cell.com
Viruses are key members of Earth's microbiomes, shaping microbial community composition
and metabolism. Here, we describe recent advances in'soil viromics', that is, virus-focused …

A phylogenomic framework for charting the diversity and evolution of giant viruses

FO Aylward, M Moniruzzaman, AD Ha, EV Koonin - PLoS Biology, 2021 - journals.plos.org
Large DNA viruses of the phylum Nucleocytoviricota have recently emerged as important
members of ecosystems around the globe that challenge traditional views of viral …

Spatial turnover of soil viral populations and genotypes overlain by cohesive responses to moisture in grasslands

C Santos-Medellín, K Estera-Molina… - Proceedings of the …, 2022 - National Acad Sciences
Viruses shape microbial communities, food web dynamics, and carbon and nutrient cycling
in diverse ecosystems. However, little is known about the patterns and drivers of viral …