[HTML][HTML] Integration of Omics Data and Network Models to Unveil Negative Aspects of SARS-CoV-2, from Pathogenic Mechanisms to Drug Repurposing

L Bernardo, A Lomagno, PL Mauri, D Di Silvestre - Biology, 2023 - mdpi.com
Simple Summary SARS-CoV-2 caused the COVID-19 health emergency, affecting millions
of people worldwide. Samples collected from hospitalized or dead patients from the early …

Using machine‐learning‐driven approaches to boost hot‐spot's knowledge

N Rosário‐Ferreira, AMJJ Bonvin… - Wiley Interdisciplinary …, 2022 - Wiley Online Library
Understanding protein–protein interactions (PPIs) is fundamental to describe and to
characterize the formation of biomolecular assemblies, and to establish the energetic …

Integrated bioinformatics analysis to identify alternative therapeutic targets for Alzheimer's disease: insights from a synaptic machinery perspective

H Ceylan - Journal of Molecular Neuroscience, 2022 - Springer
Abstract Alzheimer's disease (AD), the most common type of dementia, is a serious
neurodegenerative disease that has no cure yet, but whose symptoms can be alleviated with …

Bioinformatics‐based identification of hepatocellular carcinoma‐associated hub genes and assessment of the restorative effect of tannic acid in rat liver exposed to …

H Tosun, H Karadas, H Ceylan - Cancer Medicine, 2024 - Wiley Online Library
Background Hepatocellular carcinoma (HCC) is the most common type of primary liver
cancer, occurring mostly in individuals with chronic liver disease, but biomarkers for …

[HTML][HTML] Identification of critical genes and molecular pathways in COVID-19 myocarditis and constructing gene regulatory networks by bioinformatic analysis

F Zhang, C Yu, W Xu, X Li, J Feng, H Shi, J Yang… - Plos one, 2022 - journals.plos.org
Background There is growing evidence of a strong relationship between COVID-19 and
myocarditis. However, there are few bioinformatics-based analyses of critical genes and the …

[HTML][HTML] Drug genetic associations with COVID-19 manifestations: a data mining and network biology approach

T Charitou, PI Kontou, IA Tamposis… - The …, 2022 - nature.com
Available drugs have been used as an urgent attempt through clinical trials to minimize
severe cases of hospitalizations with Coronavirus disease (COVID-19), however, there are …

[HTML][HTML] In-silico discovery of common molecular signatures for which SARS-CoV-2 infections and lung diseases stimulate each other, and drug repurposing

MH Alamin, MM Rahaman, F Ferdousi, A Sarker… - PloS one, 2024 - journals.plos.org
COVID-19 caused by SARS-CoV-2 is a global health issue. It is yet a severe risk factor to the
patients, who are also suffering from one or more chronic diseases including different lung …

The hepatoprotective potential of tannic acid against doxorubicin‐induced hepatotoxicity: Insights into its antioxidative, anti‐inflammatory, and antiapoptotic …

N Özturk, H Ceylan, Y Demir - Journal of Biochemical and …, 2024 - Wiley Online Library
Doxorubicin (DOX), which is frequently used in cancer treatment, has limited clinical use due
to adverse effects on healthy tissues, especially the liver. Therefore, it is necessary to …

[HTML][HTML] A systems biology approach for investigating significantly expressed genes among COVID-19, hepatocellular carcinoma, and chronic hepatitis B

B Sokouti - Egyptian Journal of Medical Human Genetics, 2022 - Springer
Abstract Background Worldwide, COVID-19's death rate is about 2%, considering the
incidence and mortality. However, the information on its complications in other organs …

A nine-hub-gene signature of metabolic syndrome identified using machine learning algorithms and integrated bioinformatics

G Liu, S Luo, Y Lei, J Wu, Z Huang, K Wang… - …, 2021 - Taylor & Francis
Early risk assessments and interventions for metabolic syndrome (MetS) are limited because
of a lack of effective biomarkers. In the present study, several candidate genes were …