LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model

C Vitte, O Panaud - Cytogenetic and genome research, 2005 - karger.com
Abstract Long Terminal Repeat (LTR) retrotransposons are ubiquitous components of plant
genomes. Because of their copy-and-paste mode of transposition, these elements tend to …

Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery

S Deschamps, MA Campbell - Molecular breeding, 2010 - Springer
Genome-wide variant detection within a species is the primary initial step towards linking
genotypic variation and phenotypes. The conversion of these genetic variants (the most …

Mechanisms of recent genome size variation in flowering plants

JL Bennetzen, J Ma, KM Devos - Annals of botany, 2005 - academic.oup.com
Background and Aims Plant nuclear genomes vary tremendously in DNA content, mostly
due to differences in ancestral ploidy and variation in the degree of transposon amplification …

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

J Ma, KM Devos, JL Bennetzen - Genome research, 2004 - genome.cshlp.org
We initially analyzed 11 families of low-and middle-copy-number long terminal repeat (LTR)
retrotransposons in rice to determine how their structures have diverged from their predicted …

The barley stem rust-resistance gene Rpg1 is a novel disease-resistance gene with homology to receptor kinases

R Brueggeman, N Rostoks, D Kudrna… - Proceedings of the …, 2002 - National Acad Sciences
Stem rust caused by Puccinia graminis f. sp. tritici was among the most devastating diseases
of barley in the northern Great Plains of the US and Canada before the deployment of the …

A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture

RM Clark, TN Wagler, P Quijada, J Doebley - Nature genetics, 2006 - nature.com
Although quantitative trait locus (QTL) mapping has been successful in describing the
genetic architecture of complex traits,,,, the molecular basis of quantitative variation is less …

[图书][B] Genetic Resources, Chromosome Engineering, and Crop Improvement: Cereals, Volume 2

RJ Singh, PP Jauhar - 2006 - taylorfrancis.com
Summarizing landmark research, Volume 2 of this essential series furnishes information on
the availability of germplasm resources that breeders can exploit for producing high-yielding …

Sequence composition, organization, and evolution of the core Triticeae genome

W Li, P Zhang, JP Fellers, B Friebe, BS Gill - The Plant Journal, 2004 - Wiley Online Library
We investigated the composition and the basis of genome expansion in the core Triticeae
genome using Aegilops tauschii, the D‐genome donor of bread wheat. We sequenced an …

454 sequencing put to the test using the complex genome of barley

T Wicker, E Schlagenhauf, A Graner, TJ Close, B Keller… - BMC genomics, 2006 - Springer
Background During the past decade, Sanger sequencing has been used to completely
sequence hundreds of microbial and a few higher eukaryote genomes. In recent years, a …

CACTA transposons in Triticeae. A diverse family of high-copy repetitive elements

T Wicker, R Guyot, N Yahiaoui, B Keller - Plant physiology, 2003 - academic.oup.com
In comparison with retrotransposons, which comprise the majority of the Triticeae genomes,
very few class 2 transposons have been described in these genomes. Based on the recent …