A Sarcina bacterium linked to lethal disease in sanctuary chimpanzees in Sierra Leone

LA Owens, B Colitti, I Hirji, A Pizarro, JE Jaffe… - Nature …, 2021 - nature.com
Human and animal infections with bacteria of the genus Sarcina (family Clostridiaceae) are
associated with gastric dilation and emphysematous gastritis. However, the potential roles of …

CaREM1.4 interacts with CaRIN4 to regulate Ralstonia solanacearum tolerance by triggering cell death in pepper

Y Zhang, S Guo, F Zhang, P Gan, M Li… - Horticulture …, 2023 - academic.oup.com
Remorins, plant-specific proteins, have a significant role in conferring on plants the ability to
adapt to adverse environments. However, the precise function of remorins in resistance to …

A novel method for alignment-free DNA sequence similarity analysis based on the characterization of complex networks

J Zhou, P Zhong, T Zhang - Evolutionary Bioinformatics, 2016 - journals.sagepub.com
Determination of sequence similarity is one of the major steps in computational phylogenetic
studies. One of the major tasks of computational biologists is to develop novel mathematical …

RAFTS3: Rapid alignment-free tool for sequence similarity search

RA Vialle, F Oliveira Pedrosa, VA Weiss, D Guizelini… - BioRxiv, 2016 - biorxiv.org
Background Similarity search of a given protein sequence against a database is an
essential task in genome analysis. Sequence alignment is the most used method to perform …

ProtPCV: A fixed dimensional numerical representation of protein sequence to significantly reduce sequence search time

MK Pal, T Lahiri, R Kumar - Interdisciplinary Sciences: Computational Life …, 2020 - Springer
Protein sequence is a wealth of experimental information which is yet to be exploited to
extract information on protein homologues. Consequently, it is observed from publications …

Virus genome sequence classification using features based on nucleotides, words and compression

T Wang, M Herbster, IS Mian - arXiv preprint arXiv:1809.03950, 2018 - arxiv.org
The ICTV develops, refines and maintains a universal virus taxonomy; Order is the highest
taxon in the branching hierarchy of recognised viral taxa. Historically, ICTV (sub) committees …

A new feature vector model for alignment-free DNA sequence similarity analysis

E Delibaş, A Arslan - Sigma Journal of Engineering and Natural …, 2022 - dergipark.org.tr
Improvements in technology have triggered the production of big data. Within this scope,
enormous amounts of biological data have been generated. A number of analysis methods …

Genome sequence-based virus taxonomy using machine learning

T Wang - 2017 - discovery.ucl.ac.uk
Virus taxonomy is the task of partitioning the world of viruses into a coherent scheme of
easily recognisable entities, with the major purpose of answering the everyday needs of …