Corset: enabling differential gene expression analysis for de novoassembled transcriptomes
NM Davidson, A Oshlack - Genome biology, 2014 - Springer
Next generation sequencing has made it possible to perform differential gene expression
studies in non-model organisms. For these studies, the need for a reference genome is …
studies in non-model organisms. For these studies, the need for a reference genome is …
[PDF][PDF] Leveraging multiple transcriptome assembly methods for improved gene structure annotation
Background The performance of RNA sequencing (RNA-seq) aligners and assemblers
varies greatly across different organisms and experiments, and often the optimal approach is …
varies greatly across different organisms and experiments, and often the optimal approach is …
Challenges and advances for transcriptome assembly in non-model species
Analyses of high-throughput transcriptome sequences of non-model organisms are based
on two main approaches: de novo assembly and genome-guided assembly using mapping …
on two main approaches: de novo assembly and genome-guided assembly using mapping …
Transcriptome, proteome and draft genome of Euglena gracilis
Background Photosynthetic euglenids are major contributors to fresh water ecosystems.
Euglena gracilis in particular has noted metabolic flexibility, reflected by an ability to thrive in …
Euglena gracilis in particular has noted metabolic flexibility, reflected by an ability to thrive in …
Euglena gracilis Genome and Transcriptome: Organelles, Nuclear Genome Assembly Strategies and Initial Features
Euglena gracilis is a major component of the aquatic ecosystem and together with closely
related species, is ubiquitous worldwide. Euglenoids are an important group of protists …
related species, is ubiquitous worldwide. Euglenoids are an important group of protists …
RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species
Background Identifying genes of adaptive significance in a changing environment is a major
focus of ecological genomics. Such efforts were restricted, until recently, to researchers …
focus of ecological genomics. Such efforts were restricted, until recently, to researchers …
Effects of different dietary β-glucan levels on antioxidant capacity and immunity, gut microbiota and transcriptome responses of white shrimp (Litopenaeus vannamei) …
β-Glucan could significantly improve the antioxidant capacity of aquatic animals. The effects
of different dietary levels (0 (control), 0.05, 0.1, 0.2 or 0.4%) of β-glucan on the growth …
of different dietary levels (0 (control), 0.05, 0.1, 0.2 or 0.4%) of β-glucan on the growth …
Transcriptomic response to heat stress among ecologically divergent populations of redband trout
SR Narum, NR Campbell - BMC genomics, 2015 - Springer
Background As ectothermic organisms have evolved to differing aquatic climates, the
molecular basis of thermal adaptation is a key area of research. In this study, we tested for …
molecular basis of thermal adaptation is a key area of research. In this study, we tested for …
Longevity and transposon defense, the case of termite reproductives
D Elsner, K Meusemann, J Korb - Proceedings of the …, 2018 - National Acad Sciences
Social insects are promising new models in aging research. Within single colonies, longevity
differences of several magnitudes exist that can be found elsewhere only between different …
differences of several magnitudes exist that can be found elsewhere only between different …
Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants
C Morandin, MMY Tin, S Abril, C Gómez, L Pontieri… - Genome biology, 2016 - Springer
Background Reproductive division of labor in eusocial insects is a striking example of a
shared genetic background giving rise to alternative phenotypes, namely queen and worker …
shared genetic background giving rise to alternative phenotypes, namely queen and worker …