[HTML][HTML] Recent developments and applications of the MMPBSA method
The Molecular Mechanics Poisson-Boltzmann Surface Area (MMPBSA) approach has been
widely applied as an efficient and reliable free energy simulation method to model molecular …
widely applied as an efficient and reliable free energy simulation method to model molecular …
Metabolic functions of FABPs—mechanisms and therapeutic implications
GS Hotamisligil, DA Bernlohr - Nature Reviews Endocrinology, 2015 - nature.com
Intracellular and extracellular interactions with proteins enables the functional and
mechanistic diversity of lipids. Fatty acid-binding proteins (FABPs) were originally described …
mechanistic diversity of lipids. Fatty acid-binding proteins (FABPs) were originally described …
[HTML][HTML] A causal role for hyperinsulinemia in obesity
Insulin modulates the biochemical pathways controlling lipid uptake, lipolysis and
lipogenesis at multiple levels. Elevated insulin levels are associated with obesity, and …
lipogenesis at multiple levels. Elevated insulin levels are associated with obesity, and …
A comparative insight into amprenavir resistance of mutations V32I, G48V, I50V, I54V, and I84V in HIV-1 protease based on thermodynamic integration and MM-PBSA …
J Chen, X Wang, T Zhu, Q Zhang… - Journal of chemical …, 2015 - ACS Publications
Drug resistance of mutations V32I, G48V, I50V, I54V, and I84V in HIV-1 protease (PR) was
found in clinical treatment of HIV patients with the drug amprenavir (APV). In order to …
found in clinical treatment of HIV patients with the drug amprenavir (APV). In order to …
Molecular mechanism with regard to the binding selectivity of inhibitors toward FABP5 and FABP7 explored by multiple short molecular dynamics simulations and free …
J Chen, X Liu, S Zhang, J Chen, H Sun… - Physical Chemistry …, 2020 - pubs.rsc.org
Recently, fatty acid binding proteins 5 and 7 (FABP5 and FABP7) have been regarded as
the prospective targets for clinically treating multiple diseases related to FABPs. In this work …
the prospective targets for clinically treating multiple diseases related to FABPs. In this work …
[HTML][HTML] ABBV-744 as a potential inhibitor of SARS-CoV-2 main protease enzyme against COVID-19
A new pathogen severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has
spread worldwide and become pandemic with thousands new deaths and infected cases …
spread worldwide and become pandemic with thousands new deaths and infected cases …
[HTML][HTML] Large-scale molecular dynamics simulation: Effect of polarization on thrombin-ligand binding energy
LL Duan, GQ Feng, QG Zhang - Scientific reports, 2016 - nature.com
Molecular dynamics (MD) simulations lasting 500 ns were performed in explicit water to
investigate the effect of polarization on the binding of ligands to human α-thrombin based on …
investigate the effect of polarization on the binding of ligands to human α-thrombin based on …
[HTML][HTML] Unveiling the role of the fatty acid binding protein 4 in the metabolic-associated fatty liver disease
Metabolic-associated fatty liver disease (MAFLD), the main cause of chronic liver disease
worldwide, is a progressive disease ranging from fatty liver to steatohepatitis (metabolic …
worldwide, is a progressive disease ranging from fatty liver to steatohepatitis (metabolic …
[HTML][HTML] Revealing origin of decrease in potency of darunavir and amprenavir against HIV-2 relative to HIV-1 protease by molecular dynamics simulations
J Chen, Z Liang, W Wang, C Yi, S Zhang, Q Zhang - Scientific reports, 2014 - nature.com
Clinical inhibitors Darunavir (DRV) and Amprenavir (APV) are less effective on HIV-2
protease (PR2) than on HIV-1 protease (PR1). To identify molecular basis associated with …
protease (PR2) than on HIV-1 protease (PR1). To identify molecular basis associated with …
Impact of non-synonymous mutations on the structure and function of telomeric repeat binding factor 1
Telomeric repeat binding factor 1 (TRF1) is one of the major components of the shelterin
complex. It directly binds to the telomere and controls its function by regulating the …
complex. It directly binds to the telomere and controls its function by regulating the …