Electrostatic interactions in protein structure, folding, binding, and condensation
Charged and polar groups, through forming ion pairs, hydrogen bonds, and other less
specific electrostatic interactions, impart important properties to proteins. Modulation of the …
specific electrostatic interactions, impart important properties to proteins. Modulation of the …
Functional DNA–polymer conjugates
CJ Whitfield, M Zhang, P Winterwerber, Y Wu… - Chemical …, 2021 - ACS Publications
DNA nanotechnology has seen large developments over the last 30 years through the
combination of solid phase synthesis and the discovery of DNA nanostructures. Solid phase …
combination of solid phase synthesis and the discovery of DNA nanostructures. Solid phase …
Slowing down DNA translocation through a nanopore in lithium chloride
SW Kowalczyk, DB Wells, A Aksimentiev, C Dekker - Nano letters, 2012 - ACS Publications
The charge of a DNA molecule is a crucial parameter in many DNA detection and
manipulation schemes such as gel electrophoresis and lab-on-a-chip applications. Here, we …
manipulation schemes such as gel electrophoresis and lab-on-a-chip applications. Here, we …
Understanding nucleic acid–ion interactions
Ions surround nucleic acids in what is referred to as an ion atmosphere. As a result, the
folding and dynamics of RNA and DNA and their complexes with proteins and with each …
folding and dynamics of RNA and DNA and their complexes with proteins and with each …
[PDF][PDF] Recent progress in numerical methods for the Poisson-Boltzmann equation in biophysical applications
Efficiency and accuracy are two major concerns in numerical solutions of the Poisson-
Boltzmann equation for applications in chemistry and biophysics. Recent developments in …
Boltzmann equation for applications in chemistry and biophysics. Recent developments in …
[HTML][HTML] Recent advances in continuum modeling of interfacial and transport phenomena in electric double layer capacitors
This paper reviews recent advances in physical modeling of interfacial and transport
phenomena in electric double layer capacitors (EDLCs) under both equilibrium and dynamic …
phenomena in electric double layer capacitors (EDLCs) under both equilibrium and dynamic …
Continuum molecular electrostatics, salt effects, and counterion binding—a review of the Poisson–Boltzmann theory and its modifications
P Grochowski, J Trylska - Biopolymers: Original Research on …, 2008 - Wiley Online Library
This work is a review of the Poisson–Boltzmann (PB) continuum electrostatics theory and its
modifications, with a focus on salt effects and counterion binding. The PB model is one of the …
modifications, with a focus on salt effects and counterion binding. The PB model is one of the …
Biomolecular electrostatics and solvation: a computational perspective
An understanding of molecular interactions is essential for insight into biological systems at
the molecular scale. Among the various components of molecular interactions, electrostatics …
the molecular scale. Among the various components of molecular interactions, electrostatics …
Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids
Y Bai, M Greenfeld, KJ Travers, VB Chu… - Journal of the …, 2007 - ACS Publications
The ion atmosphere around nucleic acids critically affects biological and physical processes
such as chromosome packing, RNA folding, and molecular recognition. However, the …
such as chromosome packing, RNA folding, and molecular recognition. However, the …
Theory and modeling of RNA structure and interactions with metal ions and small molecules
In addition to continuous rapid progress in RNA structure determination, probing, and
biophysical studies, the past decade has seen remarkable advances in the development of …
biophysical studies, the past decade has seen remarkable advances in the development of …