Hydrogel microneedle-assisted assay integrating aptamer probes and fluorescence detection for reagentless biomarker quantification

H Zheng, A GhavamiNejad, P GhavamiNejad… - ACS …, 2022 - ACS Publications
Analyzing interstitial fluid (ISF) via microneedle (MN) devices enables patient health
monitoring in a minimally invasive manner and in point-of-care settings. However, most MN …

[HTML][HTML] Non-random DNA fragmentation in next-generation sequencing

MS Poptsova, IA Il'Icheva, DY Nechipurenko… - Scientific reports, 2014 - nature.com
Abstract Next Generation Sequencing (NGS) technology is based on cutting DNA into small
fragments and their massive parallel sequencing. The multiple overlapping segments …

A nucleotide resolution map of Top2-linked DNA breaks in the yeast and human genome

WH Gittens, DJ Johnson, RM Allison, TJ Cooper… - Nature …, 2019 - nature.com
DNA topoisomerases are required to resolve DNA topological stress. Despite this essential
role, abortive topoisomerase activity generates aberrant protein-linked DNA breaks …

Sequence-specific ultrasonic cleavage of DNA

SL Grokhovsky, IA Il'Icheva, DY Nechipurenko… - Biophysical journal, 2011 - cell.com
We investigated the phenomenon of ultrasonic cleavage of DNA by analyzing a large set of
cleavage patterns of DNA restriction fragments using polyacrylamide gel electrophoresis …

Identification and Characterization of an Antifungal Gene Mt1 from Bacillus subtilis by Affecting Amino Acid Metabolism in Fusarium graminearum

P Song, W Dong - International Journal of Molecular Sciences, 2023 - mdpi.com
Fusarium head blight is a devastating disease that causes significant economic losses
worldwide. Fusarium graminearum is a crucial pathogen that requires close attention when …

Structural features of DNA that determine RNA polymerase II core promoter

IA Il'icheva, MV Khodikov, MS Poptsova… - BMC genomics, 2016 - Springer
Background The general structure and action of all eukaryotic and archaeal RNA
polymerases machinery have an astonishing similarity despite the diversity of core promoter …

Core promoter regions of antisense and long intergenic non-coding RNAs

EA Savina, TG Shumilina, VG Tumanyan… - International Journal of …, 2023 - mdpi.com
RNA polymerase II (POL II) is responsible for the transcription of messenger RNAs (mRNAs)
and long non-coding RNAs (lncRNAs). Previously, we have shown the evolutionary …

The role of defects on the assembly and stability of DNA nanostructures.

DG Greene, JW Keum, H Bermudez - Small (Weinheim an der …, 2012 - europepmc.org
The role of defects on the assembly and stability of DNA nanostructures. - Abstract - Europe
PMC Sign in | Create an account https://orcid.org Europe PMC Menu About Tools Developers …

Proximal-end bias from in-vitro reconstituted nucleosomes and the result on downstream data analysis

DA Bates, CE Bates, AS Earl, C Skousen, AN Fetbrandt… - Plos one, 2021 - journals.plos.org
The most basic level of eukaryotic gene regulation is the presence or absence of
nucleosomes on DNA regulatory elements. In an effort to elucidate in vivo nucleosome …

The influence of CpG (5′-d (CpG)-3′ dinucleotides) methylation on ultrasonic DNA fragmentation

RR Garafutdinov, AA Galimova… - Journal of …, 2019 - Taylor & Francis
DNA methylation is an important way of gene regulation. The variety of methods for DNA
methylation analysis based on chemical modification or enzyme digestion has been …